Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0408 ATGTCCATCCACTATTCTCCGCCCTCTTTGCCCACCCTCCAATCCATCCGCCGCTCTCTCTCCGATATCTCTTCTCCGCCACCAGACCACCGCCCCTTCGACACCCCCCGACGCTTCGCCGCCTTCGCCAACCGCCTCTCCCAACTCCTCCTCCCCCCACTTCCTCAATCTCCCCCTATCCACACCGCTCTCAAGGGACTCGCCGCCGAGCTCTCCAAGGCCGCCGAAACCCTCTCCGTCTACAACAACGGCAGCAAGATTCTCGTCCTCGTCCACTGTAAATCCCTATGCTCCTCCCTTCAAGATCGCGCTGTAGCCATTGCCGCCTGGCTCGCACTCCTCGCTTCCGCCCTCCCATCCGGCGACGGCGACGACGACTTCCGCAAGAAGGTCTCCGACCTCGCCAGAGACATGAAACTCGCACAGTTCAGAGTCTCAGAGAACGAAGAGAGGGTTTGGTGCACGCTGGAAAAGGAAGGAGATGGGAGAGACAGCAGTAAAGCAGTGCAAAGTGGTATTGTCATGGATTTGGCTCGTGCTTTGGGGTTTGACCCTGGTGATCGTGCCGAGTTTTGTAGCCAGGTGAAGCTCTTCAAAGGTGATCCTTTTAGATCCCATTCTGTACCTGAGAGAAGGGTGTTGGTGTCCTTGGAGAGAATTCTTAGTAACTGGTCTGTGGAGCCTGTCACTGTGACCCCCAATTGGGACTTTGAAATTGCTGAAGATGCTGCTGCTCCTGTTTTTCCATTTAAGAGTTTTCTCTGCCCCTTGACCAAGGAAGTCATGAGGGACCCTGTGGTTGTTCTGGAGTCTTCTCAGGCCTATGAGAGGGCTGCTATTGAGTACTGGTTTGAACGGTGCATTCAAGATGGCCGTGATCCCACTTGTCCGGTTACTGGCACGGTTCTTAAGTCCTTGGAGCTGAAACCTAATATTGGGTTGGCTGGGGCAATTGAAGAGTGGGTTGGCAGGGTTATCGATTATCAAATCAAATCTTCAGTGCAGTCTCTGAAAGAGGAACCCTTGTCTGTTGGTCAAGTTGAGCGTGCTCTGGATCATGTTTATAAGGTTTCTGAAGAGCACCCCTCTAGCAGATACATAATCAGAAATGCTGGTGTTGTGCAGTTGATAGTAACACTGCTCAGTAATAACTCCAAAACTATTGGATCACGTTTGAGAAGCAAAGCTCTAACGACTTTACTTAGTATGGCCAAGGATGAAGAAAGCAGGAAAATAATGCTGGAACGGGGTATCACTAGATTGGCCGTACATAGTCTTATTGGGAGCTCTACGAAGGAGAGAGAATATGCTACCAAGTTATTACTGGAATTCTGCAATGATGAAGATTGTTGTGCAAGAATAGCATCCGAAAAGGGTGCTTTAGTTCTTCTCTCAAGTATAGCAGGAAATATGGAGTATCCGTCTTTGTCAAAATTAGCTGAGGAAGTCTTGAGGCTAATGGAGAGGGTAGAGGATAATGTTCAATGTTTGGCAGCAGCTGGAAGATTTGGACCATTGATTTCACGGTTACATGATGGTTCTGTTGGTGTAAAGATAGAGATGGCTTCTCTGGTGGGAAGGATGACTTTGACAAATAGCTGTAAAGAACAAATTGCAAGGCAAGGTGCCCGAGTATTTGTCGAACTTCTGTCTAATCAAGAAGGAAGGGGACCGAGTCTGCAAGCATTGTATAATTTGTCAGGATTGGATGGCAATGCAACTATCCTTATTGAGTCTTCAGTTCTTCCATCACTTATAGAAGTTTTATTTGATACTGAGGATCCATCCCATGAGCTGAAGTCATTAGCAGCTTCAACAATTGCGAATATTGTATCTAAGCCAGGGCATTGGGAATTAGCATCTGCTGACAAGGATGGAAACCCAATGCATTCAGAAATTATTGTTTTAAGACTTTTGGGGCTTTTGAACTGCTTGCCTTCTCAGTGTCAAGTGATAGTTCTTCGCATTCTTTGTGGTATTACATTATCTCCTCAAGCATCAGAGTTAGTAGCAAGCCATATCACGTCTAAGGGTGGCTTTGGAACGATTATACCATTTCTGGAACATCTAGAAGTTGAACATAGAGTGTTTGCTTTTAAGCTTACAAGGCTACTATCTGAATGGTTTAGTCAATACATTGCAAATGAGTTGAGACTTTCAAACAAGCTTACTATACTCAAAGAAAAACTGTTAAATAACCAATCTACAAGTGATGAGAGATCAGATGCAGCACAGATACTTGCCAATATTTCCCTCTCAGAAGATGAAATACGGACACTTTTAGGAGGTAATTTTGTGGAATGGACTGCTTTTACTCTGAAGAATCAGCTGCGTGTTTCCAATGCAAGGTCTTCTCAGACTGCAGCAGGCATGCAGGAAGGTCTTATAGGTCTCTTGCTTCACTTCACAAGGAACCTTGATCAAGAAACTCTTAATATAATTAGAGAAAATCACCTTATGGCCATTTTCTGCGAACAGCTAGATTATAGTTCAAAACCAAAGGTAAAACGACTAGCTGCCATCGGATTGAAAAACTTATCAGAATTTGGAAGGTCAGATACTGCTAGGGATTCTAAACTACCATCTTCCAGTGGATTCTGTTCCTCCCTTGTGCTTGTGTGCGGGAGAGCCTCTAATCAACCTTCCACATGTCCAGTTCACAACCGTCCGTGCCATGAAGATAGTCAATTGTGCCTACTCAAGAGCAACTGTATCAAACCCTTGGTTAATATCCTCAATGACAGTGACACTGATGTTCAACTAGCTGCAGTGGATGCACTTTCTACTCTACTACTACTAGATCACACATCTCGCAGTTTTAAAAGAGTTGTTGATGAGCTTGAACATTTGGGTGCAGTTGATGCTCTTACCACTCTTTTTACTGAAGTTAGATCTGAGGAGCTTCGGGAGAAGACAATTTGGATGATCGAAAAGATATTGAGAGTGGAAAATATCAGCAGTCGGTATGCACTCAATCATTCTCTTGTGAGAGCTTTGGTTGAAGCCTTTAAGCATGGCAATACCAACACGAGGAAACATGCTCAAGATGCTCTTACCCTTCTAAAGCAGTTATCAGGAGTTAGTGGAAAGACATCAAGTCAAACTCGAGTTAAGAGATAG 3120 0.4516 MSIHYSPPSLPTLQSIRRSLSDISSPPPDHRPFDTPRRFAAFANRLSQLLLPPLPQSPPIHTALKGLAAELSKAAETLSVYNNGSKILVLVHCKSLCSSLQDRAVAIAAWLALLASALPSGDGDDDFRKKVSDLARDMKLAQFRVSENEERVWCTLEKEGDGRDSSKAVQSGIVMDLARALGFDPGDRAEFCSQVKLFKGDPFRSHSVPERRVLVSLERILSNWSVEPVTVTPNWDFEIAEDAAAPVFPFKSFLCPLTKEVMRDPVVVLESSQAYERAAIEYWFERCIQDGRDPTCPVTGTVLKSLELKPNIGLAGAIEEWVGRVIDYQIKSSVQSLKEEPLSVGQVERALDHVYKVSEEHPSSRYIIRNAGVVQLIVTLLSNNSKTIGSRLRSKALTTLLSMAKDEESRKIMLERGITRLAVHSLIGSSTKEREYATKLLLEFCNDEDCCARIASEKGALVLLSSIAGNMEYPSLSKLAEEVLRLMERVEDNVQCLAAAGRFGPLISRLHDGSVGVKIEMASLVGRMTLTNSCKEQIARQGARVFVELLSNQEGRGPSLQALYNLSGLDGNATILIESSVLPSLIEVLFDTEDPSHELKSLAASTIANIVSKPGHWELASADKDGNPMHSEIIVLRLLGLLNCLPSQCQVIVLRILCGITLSPQASELVASHITSKGGFGTIIPFLEHLEVEHRVFAFKLTRLLSEWFSQYIANELRLSNKLTILKEKLLNNQSTSDERSDAAQILANISLSEDEIRTLLGGNFVEWTAFTLKNQLRVSNARSSQTAAGMQEGLIGLLLHFTRNLDQETLNIIRENHLMAIFCEQLDYSSKPKVKRLAAIGLKNLSEFGRSDTARDSKLPSSSGFCSSLVLVCGRASNQPSTCPVHNRPCHEDSQLCLLKSNCIKPLVNILNDSDTDVQLAAVDALSTLLLLDHTSRSFKRVVDELEHLGAVDALTTLFTEVRSEELREKTIWMIEKILRVENISSRYALNHSLVRALVEAFKHGNTNTRKHAQDALTLLKQLSGVSGKTSSQTRVKR* 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0408 1039 SUPERFAMILY ARM repeat 560 979 IPR016024 -
Vra10g0408 1039 SMART Ubox_2 252 321 IPR003613 GO:0004842|GO:0016567
Vra10g0408 1039 Coils Coil 480 500 - -
Vra10g0408 1039 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 324 IPR013083 -
Vra10g0408 1039 Pfam U-box domain 253 322 IPR003613 GO:0004842|GO:0016567
Vra10g0408 1039 SMART arm_5 531 568 IPR000225 GO:0005515
Vra10g0408 1039 SMART arm_5 569 612 IPR000225 GO:0005515
Vra10g0408 1039 SMART arm_5 361 405 IPR000225 GO:0005515
Vra10g0408 1039 SMART arm_5 940 981 IPR000225 GO:0005515
Vra10g0408 1039 SMART arm_5 892 932 IPR000225 GO:0005515
Vra10g0408 1039 SMART arm_5 807 848 IPR000225 GO:0005515
Vra10g0408 1039 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 1033 - -
Vra10g0408 1039 Gene3D - 887 1035 IPR011989 -
Vra10g0408 1039 SUPERFAMILY ARM repeat 343 617 IPR016024 -
Vra10g0408 1039 Gene3D - 325 850 IPR011989 -
Vra10g0408 1039 ProSiteProfiles U-box domain profile. 248 328 IPR003613 GO:0004842|GO:0016567
Vra10g0408 1039 Pfam Armadillo/beta-catenin-like repeat 898 930 IPR000225 GO:0005515
Vra10g0408 1039 SUPERFAMILY RING/U-box 250 322 - -
Vra10g0408 1039 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 1033 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0408 Vra-Chr10 9564096 9571454 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0408 250 1028 U-box Gene Family AT1G20780 29.089 2.45e-83 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0408 - - gmx:102659945 1766.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0408 10 9564096 9571454 Vra10g0408 10 9564096 9571454 ECH