Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0405 ATGACACCACCTTTCACTCTCTCCCTCTCCCTCTTCGCCGTTTTCTCTATAACCGCCGTGCACGGCCTCGGCTCCGCCGCCACCGTTGCCGTAACATACGGCACCGCCACCGTGTGCGGTATTGTTGCCGGGGAGCTCCACCACCGCATTCAGTGCTCCAGGGACGGAAGGCGCGTCCCTCTCACACTCCCCAACTCCTCCTTCGATGCCATCTCCGGCGGCAGGAACTTCTTCTGCGGCCTGCGCTCCGGGGGCCGGAGCCTCCACTGCTGGGACACTGCCGCCGCAGACGGTTCGCTCTGCCCCAAGAGGGTCTTCCACAGCGACGTGGTGCAGTTGGCGGACGTGGCAGTTGGTGATTCCCAGGTGTGCGCGAGGGAGGTGCAATCCGGTGTGGTGAGGTGCTGGAGAGGAAACAAGAGGGTCGAATTTTCTTCTCCCTCGCAGAGCCTAAGGTTTCGGAGTGTCACATGCGGTCGTGGTTTTTCATGTGGGATATTGAGAGAGAGCGGGAGGGTTGTGTGTTGGGGTGGTGGTGGTGGTGATGAGGGTGCATATATCAGTGGTGAGATTCAAAGAAAGTTTGAGAATTTTTCTATGTCGAGTTTGGTTGCTGGGGTGTCTCATGCATGTGGTTTGACTCTTCACGGGGCTTTGGTTTGTGGAGGGAACAATCGTTCAGGTCAACTCGGAAACAGTGTTCTTTTAAGTTCTTTGGATTTTTCGGCTCTTGCTTTGGGAGAGGGTTTCACGTGTGGTATTAGGCGGAGGAATGGGATTGTTGTGTGTTGGGGTGGTGGTTTTGATAGTGATGTGGTGAAGGGTGTTTCCTTTGAGTCTCTTGTTGCTGGTTTGGATTATGTTTGTGGGTTGATGACTGGGAATTTGTCTGTGGTTTGTTGGGGTGGTAAGGGTGGGTTTGATGTGGCTAATGAGATTCCATTGGGAGAGATTCTCCCGGCTCCTTGTGTTGAGGGTGGATGTGGTAGCTCTTGTAGTACATATCCTGATTCTGATGCTCTTTGTCATGGGTCTGGGAGTATTTGCTATGATTGCCAAACTGAGGTTCCACTGGCTGTGCCATTGTTTCCACCACCATCATCACAGGTGCCTTCTTCACATGAAGCAAGAAACTTGAAGGAATTTTTGGTTTTTCTTGTTGTTGGATCAGTTGGGGCTTTTGCGGGTCTATGTACTATTGTTTATTTCCTTTGGTTTGGTGCAAAGAGGGTTTTGGTGAGGAGAGAAGTAAGTAATAGTTCTGTGAAGCCTACAAGCTCAGAGAGTGATGCCTATGTGGATATAATCCCAATGCCTAATGTTGGTTCCAATGGAACAACCTTCAGAACCTTTTCTAGCAAAAGCCATGGGTCAAGAAGGTTGAGGAGGCATAGGAGTGGTTCATCATCGAAGCATGTGGACAGGACTGAGAGTTTCTCATTGCGTGAACTGGCTACAGCCACTGACAATTTCTCATTGTATAATAAGATAGGTGCCGGTAGCTTCGGCAGTGTTTACAAAGGCATTCTAGGAGATGGTCGTGAAGTGGCCATTAAAAGAGGAGATACTAGTACTGTGAAAAAGAAATTTCAGGAGAAAGAAATTGCTTTTGATTCTGAATTGGCCATGCTGTCCCGGCTTCACCACAAACATCTGGTGAGGCTAATTGGATTCTGCGAGGAGAACGATGAGAGGCTTTTGGTCTATGAGTACATGAGCAATGGCTCACTTTATGACCATTTGCACGACAAAAACAATACAGAGAAGAGTAGCAGCATTTTAAATTCTTGGAAGATGAGGATCAAGGTTGCATTGGGTGCTGCTAGGGGAATTGAATACATTCACAACTATGCTGTGCCGCCCATTATTCACAGGGATATCAAATCATCAAACATACTTTTGGACTCAAACTGGAATGCCAGAGTGTCTGATTTTGGATTGTCACTAATTTGGCCAGAGAGTGAGCAAGAATTGATGTCCACCAAGGCAGTTGGAACTGTTGGGTACATAGACCCTGAGTACTATGTGCTGAATGTGCTAACAACAAAGAGTGATGTGTATGGTTTAGGAGTGGTGATGCTGGAGCTTCTCACAGGAAAAAGAGCAGTGTTCAAAACTGAAGATGGCTCAAGCCCTATAGGGGTAGTGGAACACACAGGGCCAAAGATAGCATCAGGAGCGCTTTGGAGTGTGTTGGATTACAGAGTCGGACAGCCAGAAGTAAATGAGGTTGAGTCCCTTGAGATCATGGCTTACACTGCTATGCACTGTGTGAACATGGAGGGAAAAGAGAGGCCAGAAATGACTGACATAGTTGCTAACTTGGAGAGGGCATTGGCTTTCATTGAAGGCAGCCCTACCAGCATTTCCCTTGCTTCCTTCTCTGCCCCTCTTGAATGA 2400 0.4858 MTPPFTLSLSLFAVFSITAVHGLGSAATVAVTYGTATVCGIVAGELHHRIQCSRDGRRVPLTLPNSSFDAISGGRNFFCGLRSGGRSLHCWDTAAADGSLCPKRVFHSDVVQLADVAVGDSQVCAREVQSGVVRCWRGNKRVEFSSPSQSLRFRSVTCGRGFSCGILRESGRVVCWGGGGGDEGAYISGEIQRKFENFSMSSLVAGVSHACGLTLHGALVCGGNNRSGQLGNSVLLSSLDFSALALGEGFTCGIRRRNGIVVCWGGGFDSDVVKGVSFESLVAGLDYVCGLMTGNLSVVCWGGKGGFDVANEIPLGEILPAPCVEGGCGSSCSTYPDSDALCHGSGSICYDCQTEVPLAVPLFPPPSSQVPSSHEARNLKEFLVFLVVGSVGAFAGLCTIVYFLWFGAKRVLVRREVSNSSVKPTSSESDAYVDIIPMPNVGSNGTTFRTFSSKSHGSRRLRRHRSGSSSKHVDRTESFSLRELATATDNFSLYNKIGAGSFGSVYKGILGDGREVAIKRGDTSTVKKKFQEKEIAFDSELAMLSRLHHKHLVRLIGFCEENDERLLVYEYMSNGSLYDHLHDKNNTEKSSSILNSWKMRIKVALGAARGIEYIHNYAVPPIIHRDIKSSNILLDSNWNARVSDFGLSLIWPESEQELMSTKAVGTVGYIDPEYYVLNVLTTKSDVYGLGVVMLELLTGKRAVFKTEDGSSPIGVVEHTGPKIASGALWSVLDYRVGQPEVNEVESLEIMAYTAMHCVNMEGKERPEMTDIVANLERALAFIEGSPTSISLASFSAPLE* 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0405 799 ProSitePatterns Protein kinases ATP-binding region signature. 497 528 IPR017441 GO:0005524
Vra10g0405 799 MobiDBLite consensus disorder prediction 455 469 - -
Vra10g0405 799 SMART serkin_6 491 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0405 799 SUPERFAMILY RCC1/BLIP-II 24 266 IPR009091 -
Vra10g0405 799 CDD STKc_IRAK 497 777 - -
Vra10g0405 799 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 6 792 IPR044815 GO:0004674
Vra10g0405 799 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 6 792 - -
Vra10g0405 799 MobiDBLite consensus disorder prediction 450 474 - -
Vra10g0405 799 ProSiteProfiles Protein kinase domain profile. 491 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0405 799 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Vra10g0405 799 Gene3D - 51 307 IPR009091 -
Vra10g0405 799 Gene3D Phosphorylase Kinase; domain 1 452 571 - -
Vra10g0405 799 Pfam Protein kinase domain 493 711 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0405 799 Gene3D Transferase(Phosphotransferase) domain 1 572 783 - -
Vra10g0405 799 SUPERFAMILY Protein kinase-like (PK-like) 468 775 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0405 Vra-Chr10 9461442 9464416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0405 6 790 Receptor kinase-like Gene Family AT3G55950 50.613 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vra10g0405 Pkinase 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0405 - - gmx:100776682 1320.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0405 10 9461442 9464416 Vra10g0405 10 9461442 9464416 ECH