Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0403 ATGGCGAAAACGACGTTGTTGTTGCTCTGTACGCTGCTCCTCTTCGGATCCCTAGCTCTCACCCAGGCGAAGAAATCAAAGGAGGAATTGAAGGAAGTGACCAACAAGGTTTTCTTTGATGTTGAGATCGATGGAAAAGCTGCAGGTCGTATTGTAATCGGTCTTTACGGGAAGGCAGTTCCAAAAACTGCAGAAAACTTCCGAGCTCTTTGCACAGGGGAAAAGGGAACTGGTAAAAATGGAAAGCCTCTCCATTACAAAGGTAGTACATTCCACAGAATTATTCCTAGCTTTATGATCCAAGGAGGTGATTTTACACATGGCAATGGAATGGGCGGAGAATCAATTTACGGAGAGAAGTTTGCTGATGAGAACTTCAAGTTAAAGCATACTGGACCAGGGATTCTGTCAATGGCAAACGCAGGTCCTGATACCAACGGTTCACAATTTTTCATCACAACTGTGACAACAAGCTGGTTGGACGGAAGGCATGTTGTTTTTGGTAAAGTTCTTTCTGGAATGGATGTTGTTTACAAGGTTGAAGCTGAAGGAAGGCAAAGTGGCACTCCCAAGAGCAAGGTTGTGATTGCTGACAGCGGTGAACTTCCTCTATAA 615 0.4439 MAKTTLLLLCTLLLFGSLALTQAKKSKEELKEVTNKVFFDVEIDGKAAGRIVIGLYGKAVPKTAENFRALCTGEKGTGKNGKPLHYKGSTFHRIIPSFMIQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGILSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQSGTPKSKVVIADSGELPL* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0403 204 Gene3D - 22 203 IPR029000 -
Vra10g0403 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 55 70 IPR002130 GO:0000413|GO:0003755
Vra10g0403 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 91 103 IPR002130 GO:0000413|GO:0003755
Vra10g0403 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 134 149 IPR002130 GO:0000413|GO:0003755
Vra10g0403 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 149 161 IPR002130 GO:0000413|GO:0003755
Vra10g0403 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 162 177 IPR002130 GO:0000413|GO:0003755
Vra10g0403 204 CDD cyclophilin_ABH_like 36 200 - -
Vra10g0403 204 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-1 12 204 - -
Vra10g0403 204 SUPERFAMILY Cyclophilin-like 32 202 IPR029000 -
Vra10g0403 204 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 12 204 - -
Vra10g0403 204 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 39 198 IPR002130 GO:0000413|GO:0003755
Vra10g0403 204 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 86 103 IPR020892 GO:0003755|GO:0006457
Vra10g0403 204 PIRSF Peptidylpro_ismrse 20 203 IPR024936 GO:0003755
Vra10g0403 204 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 38 201 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0403 Vra-Chr10 9424104 9427211 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0403 49 181 U-box Gene Family AT5G67530 47.015 3.50e-29 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0403 K01802 - gmx:100305485 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0403 10 9424104 9427211 Vra10g0403 10 9424104 9427211 ECH