Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0400 ATGGCACACCACACCATGGAGGAGGACTTGAACATCTTGGAGATGAACACTGAGCCTTGTAACAACAGCAATGCAACAACATGTGCAAAGACAGCACCACCACCACAGGAACAGAACAACCTCACATCTTCAACTTTGACAAAGAAGTGTCCATTTCTGGTCACCAAACTTCACTGCCAAAGGCTTAGGAGTTTCACAGCAAATTTGAAAGAAGTTGTTTTCGGCACTAAGCTTGCAGTGCTTTTTCCTGCTGTCCCTTTAGCTGTTGTTGCAGATTTTTATGGCCTTGGAAGGCCTTGGATTTTTGCTCTGAGCCTGCTTGGACTCACCCCTCTAGCTGAACGTGTCAGCTTCCTTACTGAGCAAATTGCGTATTACACTGGCCCCACAGTTGGAGGGCTTCTAAATGCAACCTGTGGTAATGCAACTGAGATGATCATATCTTTGCTAGCACTTCACCAAAACAAAGTAAATGTTGTGAAGCTCTCTCTGTTGGGTTCCATTCTCTCAAATCTTCTATTAGTTCTTGGAAGTTCACTCCTCTGTGGAGGCTTAGCCAACCTAAGGAAGGAGCAAATATATGATAGAAAACAAGCAGATGTAAACTCACTGGTTTTGTTGCTGGGGTTGCTGTGCCATTTGCTGCCATTAATGTTCAGATATGCCTTAGAAGGAGAATATCATTCAATAGCCACTGGCACTCTACAATTATCCAGAGCAAGCAGCATTGTTATGCTTCTAGCATATGCCGGATACATCTTCTTTCAGTTAAAAACACATCGACAACTTTTTGATGCACAAGAGGAAGATGAAAACGAAGAAGAGAAGGCTGTGATAGGATTTTGGAGTGCATTTACTTGGTTGGTTGGTATGACACTTATCATATCTCTGCTTTCTGAATATGTTGTTGCAACCATTGAGGCTGCTTCAGATTCTTGGGGCATTTCTGTTAGCTTCATTAGCATAATTTTGTTACCAATTGTGGGAAACGCTGCAGAGCATGCAGGCTCAATCATTTTCGCATTCAAGAACAAGTTGGACATATCATTAGGTGTTGCTATGGGATCTGCAACTCAAATTTCTATGTTTGTGATTCCATTAAGTGTGGTTGTTGCATGGATAATGGGTATAGAAATGGACTTGGATTTCAATCTCCTTGAAACTGGCTGCCTTGCTTTTACAATTATAGTTACAGCATTCACTTTGCAGGATGGAACTTCACACTACATGAAAGGAGTGGTTCTTTTCCTGTGTTACATCATCATTGCTGCATGCTTTTTTGTTCTCAAAACTCCACTAATCAATGAAGCATAG 1314 0.4163 MAHHTMEEDLNILEMNTEPCNNSNATTCAKTAPPPQEQNNLTSSTLTKKCPFLVTKLHCQRLRSFTANLKEVVFGTKLAVLFPAVPLAVVADFYGLGRPWIFALSLLGLTPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATEMIISLLALHQNKVNVVKLSLLGSILSNLLLVLGSSLLCGGLANLRKEQIYDRKQADVNSLVLLLGLLCHLLPLMFRYALEGEYHSIATGTLQLSRASSIVMLLAYAGYIFFQLKTHRQLFDAQEEDENEEEKAVIGFWSAFTWLVGMTLIISLLSEYVVATIEAASDSWGISVSFISIILLPIVGNAAEHAGSIIFAFKNKLDISLGVAMGSATQISMFVIPLSVVVAWIMGIEMDLDFNLLETGCLAFTIIVTAFTLQDGTSHYMKGVVLFLCYIIIAACFFVLKTPLINEA* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0400 437 Pfam Sodium/calcium exchanger protein 100 257 IPR004837 GO:0016021|GO:0055085
Vra10g0400 437 Pfam Sodium/calcium exchanger protein 284 425 IPR004837 GO:0016021|GO:0055085
Vra10g0400 437 TIGRFAM caca2: calcium/proton exchanger 64 427 - -
Vra10g0400 437 Gene3D - 129 278 IPR044880 -
Vra10g0400 437 Gene3D - 279 428 IPR044880 -
Vra10g0400 437 PANTHER VACUOLAR CATION/PROTON EXCHANGER 24 435 - -
Vra10g0400 437 TIGRFAM cax: calcium/proton exchanger 83 427 IPR004798 GO:0006816|GO:0015369
Vra10g0400 437 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 24 435 IPR004713 GO:0006812|GO:0008324|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0400 Vra-Chr10 9390904 9394129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0400 17 432 Antiporters AT2G38170 65.429 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0400 K07300 - gmx:100778821 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0400 10 9390904 9394129 Vra10g0400 10 9390904 9394129 ECH