Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0397 ATGGGAAAGTGTTCCTTCAAGGACTCTCTGAAGGCTCTGGAAGCTGATATTCAGTATGCTAATACTCTGGCATTGGACCATCCAAGGGAAAGAGATGGAGGATGCTTTCAGATGAGAATATCTTACAGTCCAGCAGCTCCTATTTTTCTATTTCTTGTTCAGTGGGCTGATTACCGCTTGGCTGGTGCTCTGGGTTTGCTCAGAGTTCTAATTTATGTGACTTATGGAAATGGGAATAATACCATGTCAATATATGAAAGGAAAGCAAGCATCAGACAATTTTACACTGTTATATTTCCTGCTCTGTTGCAACTTGAGAAAGGCATCACGGATTTGGAGGAAAGGAAACAGAAAGAAGTGGCTCTTAGGTACAAAGGAAAGAGTGGCTTCACGGAGGAAAAACTATCTGATATTGACATTGAAAGAGAAGAGGAATGTGGAGTCTGCTTGGAGGTGAAAGCTAAAGTTGTGTTGCCAGATTGCTGCCACCATATGTGTTTGCAGTGCTACAGAGATTGGTGTCAGAGATCTCAGTCTTGCCCCTTTTGCCGGAATAGCCTGAAGAGAATCGACTCCGGGGACCTTTGGATTTACACAGACATGAATGATGTTGTTGATATTGGGACTATTTCCAAAGAGAATTGCAAGAGGCTCTTTCTTTACATAGAGAAGTTGCCTTTAATTGTTCCAGATCCCAGATACGTGTTCTATGATCCATTTCTGAGATGA 729 0.4211 MGKCSFKDSLKALEADIQYANTLALDHPRERDGGCFQMRISYSPAAPIFLFLVQWADYRLAGALGLLRVLIYVTYGNGNNTMSIYERKASIRQFYTVIFPALLQLEKGITDLEERKQKEVALRYKGKSGFTEEKLSDIDIEREEECGVCLEVKAKVVLPDCCHHMCLQCYRDWCQRSQSCPFCRNSLKRIDSGDLWIYTDMNDVVDIGTISKENCKRLFLYIEKLPLIVPDPRYVFYDPFLR* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0397 242 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Vra10g0397 242 SUPERFAMILY RING/U-box 133 190 - -
Vra10g0397 242 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Vra10g0397 242 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 242 - -
Vra10g0397 242 Pfam Ring finger domain 145 184 IPR001841 -
Vra10g0397 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 193 IPR013083 -
Vra10g0397 242 PANTHER RING FINGER PROTEIN 41, 151 1 242 - -
Vra10g0397 242 SMART ring_2 146 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0397 Vra-Chr10 9348635 9350918 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0397 103 212 C2H2 Transcription Factor Family AT5G39550 21.429 1.70e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0397 - K25840 gmx:100808567 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0397 10 9348635 9350918 Vra10g0397 10 9348635 9350918 ECH