Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0396 ATGGGGGTTTCATGGGAAGAAAGTGTGACTTATTCCATCAACGCAATCTACCTTCTGTTCTCAGCCTACCTTGTCTTTGTAATGCAAATTGGGTTTGCCATGATATGTGCAGGTTCAGTGCGTGCAAAAAATGCAATGAACATAATGCTCACAAACGTGGTTGATGCAGTGGTTGGTAGCATCTCCTTCTACCTCTTCGGTTTTGCATTTGCATATGGCACTTCTAACCCTTTCATTGGCACTCATCTCTTTGCTCTATCCCACATTCCAAACGCAACTTACGACTATGCTTTCTTCCTTTACCAATGGGCTTTTGCTATAGCTGTAACAGGCATCACAAGTGGATCCATAGCTGAGAGAACTCAATTCAGTGCATATCTTGTTTTCTCATTTTTCCTCAGTGGCTTTGTCTACCCAGTTGTTGCTCATTGGCTCTGGTCATCCAGTGGTTGGCTCAGTCCAACTTCAACTCACTTGTTGCTCGGTTCAGGAGCCATTGACTTTGCTGGGAGTGGAGTCGTGCATTTGGTTGGTGCAGTTGCTGGTCTTTGGGGCTCCATCATAGAAGGCCCACGGACCGGAAGATTTGATTCTTCAGGCAGGCCCATGCCTCTTAGAGGCCATAGTGCAACACTTGTTGTACTTGGGACCTTTTTGTTATGGTTTGGTTGGTTTGGATTTAATCCAGGATCCTTTGACAAGATCCTTGTGGCTTATCCCGGCACGTCGGACCAAGGTAATTGGACCTCGGTGGGTCGGACTGCCGTAACAACCATATTAGCTGGTTCGACGGCTGGGATAACTACCTTATTCGGCCGACGATTGTTAGTCGGCCACTGGGATGCAATGGATGTGTGCAACGGCTTGCTTGGTGGGTTTGTTGCCATCACGTCCGGATGCTCTGTTGTGGAGCCATGGGCCGCCATTATTTGCGGGTTTGTATCCGCTTGGGTTTTAATTGGGCTGAACATTGTGGCCCTAAAGTTGAACTATGATGATCCATTAGAGGCAGCCCAATTGCATGGAGGGTGTGGCACTTGGGGTTTGTTGTTTACTGGGTTGTTTGCGAAAGAGGAGTTTGTGATTCAAGTGTATAATTCTGGTGAGATTGGGGTTTCAAGACCCTATGGTGTACTACTTGGAGGTGGTTGGGGATTGTTTGGAGCCCAAGTGATTGAGATTTTGACAATCTTTGGATGGGTGAGTGTAACAATGGGCCCTATATTCTATGCCTTGCACAAGCTTGAGATATTGAGAATTCCTGTTAATGAGGAAGTTGCTGGCATTGACATTTCTTGTCATGGAGGGTATGCTTATGCTCAAGAAAACTATCATCTCAGACTTTATGGAGATTACATGCCTATTCAACATGCCCTATCTTAG 1383 0.462 MGVSWEESVTYSINAIYLLFSAYLVFVMQIGFAMICAGSVRAKNAMNIMLTNVVDAVVGSISFYLFGFAFAYGTSNPFIGTHLFALSHIPNATYDYAFFLYQWAFAIAVTGITSGSIAERTQFSAYLVFSFFLSGFVYPVVAHWLWSSSGWLSPTSTHLLLGSGAIDFAGSGVVHLVGAVAGLWGSIIEGPRTGRFDSSGRPMPLRGHSATLVVLGTFLLWFGWFGFNPGSFDKILVAYPGTSDQGNWTSVGRTAVTTILAGSTAGITTLFGRRLLVGHWDAMDVCNGLLGGFVAITSGCSVVEPWAAIICGFVSAWVLIGLNIVALKLNYDDPLEAAQLHGGCGTWGLLFTGLFAKEEFVIQVYNSGEIGVSRPYGVLLGGGWGLFGAQVIEILTIFGWVSVTMGPIFYALHKLEILRIPVNEEVAGIDISCHGGYAYAQENYHLRLYGDYMPIQHALS* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0396 460 Pfam Ammonium Transporter Family 17 439 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vra10g0396 460 ProSitePatterns Ammonium transporters signature. 167 192 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vra10g0396 460 SUPERFAMILY Ammonium transporter 11 420 - -
Vra10g0396 460 PANTHER AMMONIUM TRANSPORTER 1 MEMBER 3 1 457 - -
Vra10g0396 460 Gene3D Ammonium transporter AmtB like domains 4 451 IPR029020 -
Vra10g0396 460 TIGRFAM amt: ammonium transporter 14 439 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vra10g0396 460 PANTHER AMMONIUM TRANSPORTER 1 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0396 Vra-Chr10 9346564 9347965 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0396 7 443 Inorganic Solute Cotransporters AT1G64780 66.667 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0396 K03320 - pvy:116129597 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0396 10 9346564 9347965 Vra10g0396 10 9346564 9347965 ECH