Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0394 ATGAAGAAAACACCAGTTCACAGTTTGCATCAATCTAATCAAAGAAAAAGGAATGTTGGTGTCCAAGATAGAGGTGCAGGGAACGGCACACGGAAGCGCAGTGCTGAGAACCATTCTGTTCTGACATATTTCAATTCCGTCAAGAATTTTTTTTCATTTTTTCTATCTGGGAAAAGAAAATTTGCCTCAGAAGCCCCTCAGAGTGATGACGGAAAGACCACACACAAAGTTGGAGGGGTATCGTCTTCCGCAGATGTATCGTCTGATAGTTCTAGGAGTTCATCAAAATATGTATTCTCTCAATCCTCTGCATCATCTGGCACTTCAAGTAGCCACCTTGGAGTTGGGAACTTCACCTTTGAGGAAATTTACAAGGCAACAGCAAAATTCTCTCCGGACAATAAGATTGGGGAAGGTGCGTTTGGAACAGTGTATAGGGGAAGGCTTTATGATGGATCCCTCGTGGCTGTGAAGCGTGCCAGGAAGGATTTGCAGAACAAGAACTTAGCTGAGTTCAAGAATGAAATAAACACCTTGTCAAATATTGAGCACAGGAGCCTTGTAAGATGGCGTGGGTATTTGGAGCATGGAGATGAAAAAATTCTTGTTGTTGAATATGTTAGTAATGGAACTCTTCGAGAACATTTAGATGGTTTTCGGGGAAATGGACTTGAAATTGGTGAGCGTCTGGACATAGCTATTGATGTAGCTCATGGAATTACTTACCTTCACATGTACACAGATCATCCAATTATTCATAGGGACATCAAAGCATCAAATATCTTAATCACTGATAAACTAAGGGCCAAAGTAGCAGACTTTGGTTTTGCTCGGTTGGGTTCAGAAGACCCTGCTGCAACCCATATTTCAACTCAAATAAAAGGAACAGCTGGGTACATAGATCCTGATTACATGCGAACGCATCATCTATCTGAAAAGAGTGATGTCTATTCCTTTGGTGTGTTGCTGGTTGAAATGATGACAGGACGACATGCAGTTGAACCAAAGAGACCTCTTAGTGAGAGAGTTACAATTAAATGGGCAATGCAGTTGTTGAAACAAGGAGAAGTTGTGATTGCCATGGATCCAAGACTAAAGAGAAGTCCAGCATCAAACAAAGCAGTACAAAAGGTTTTGAAGCTAGCTTTCCAATGCCTTGCACCAGTGAGGCGATCACGGCCATCTATGAAGAGTTGTGCAGAGGTTCTGTGGGAAATCCGCAAAGATTTTACAGATAGAACATCTTCTCATACTCATAATGCTTCTCACCATTCTGCAAATTTCCCTCAAAGAGATGGGAGGAAGAATAGGCATAAGACATATGGTATTGAAGATGGTAAAGGCTATAAATTTGTATCAGCATAA 1365 0.4132 MKKTPVHSLHQSNQRKRNVGVQDRGAGNGTRKRSAENHSVLTYFNSVKNFFSFFLSGKRKFASEAPQSDDGKTTHKVGGVSSSADVSSDSSRSSSKYVFSQSSASSGTSSSHLGVGNFTFEEIYKATAKFSPDNKIGEGAFGTVYRGRLYDGSLVAVKRARKDLQNKNLAEFKNEINTLSNIEHRSLVRWRGYLEHGDEKILVVEYVSNGTLREHLDGFRGNGLEIGERLDIAIDVAHGITYLHMYTDHPIIHRDIKASNILITDKLRAKVADFGFARLGSEDPAATHISTQIKGTAGYIDPDYMRTHHLSEKSDVYSFGVLLVEMMTGRHAVEPKRPLSERVTIKWAMQLLKQGEVVIAMDPRLKRSPASNKAVQKVLKLAFQCLAPVRRSRPSMKSCAEVLWEIRKDFTDRTSSHTHNASHHSANFPQRDGRKNRHKTYGIEDGKGYKFVSA* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0394 454 ProSitePatterns Protein kinases ATP-binding region signature. 136 162 IPR017441 GO:0005524
Vra10g0394 454 Coils Coil 162 182 - -
Vra10g0394 454 MobiDBLite consensus disorder prediction 63 93 - -
Vra10g0394 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Vra10g0394 454 MobiDBLite consensus disorder prediction 413 442 - -
Vra10g0394 454 MobiDBLite consensus disorder prediction 74 93 - -
Vra10g0394 454 PANTHER OS01G0253100 PROTEIN 1 444 IPR045271 GO:0004714|GO:0006468
Vra10g0394 454 SUPERFAMILY Protein kinase-like (PK-like) 107 406 IPR011009 -
Vra10g0394 454 Pfam Protein tyrosine and serine/threonine kinase 133 403 IPR001245 GO:0004672|GO:0006468
Vra10g0394 454 PANTHER OS02G0821400 PROTEIN 1 444 - -
Vra10g0394 454 Gene3D Transferase(Phosphotransferase) domain 1 207 430 - -
Vra10g0394 454 ProSiteProfiles Protein kinase domain profile. 130 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0394 454 Gene3D Phosphorylase Kinase; domain 1 90 206 - -
Vra10g0394 454 SMART serkin_6 130 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0394 454 MobiDBLite consensus disorder prediction 1 34 - -
Vra10g0394 454 MobiDBLite consensus disorder prediction 428 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0394 Vra-Chr10 9248051 9251738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0394 103 407 Receptor kinase-like Gene Family AT2G23450 43.831 1.17e-66 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Vra10g0394 PK_Tyr_Ser-Thr 3.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0394 - - gmx:100815871 707.983