Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra10g0392 | ATGTTCGTTTGTGGCATATGTTTGGATACGAAGCTAGTCTCTAAGGGTTTCAAAGATGGCAAGTGTAGGCTTTGCAATCACTCATTTTGCACTGACTGCATATTAAAGTATGTGGAAACTCTAATACACCGGAATGATCTTCTCGAAATGACTTGTCCAGGCCCTAATTGTGGTATAGAATTGGAGCCTGAATCTTTCCGTACCCTTTTGGCTCCTGAAGTTATTGATAGATGGGAAATTACGAGATGCGAGTCTGCGATTCGTTGGTCGGAGAGGATTTACTGCCCCTTCAAGGAATGTTCAGGCCTGTTGGTGAATGAAGAAAGAGAGGTTGTGACCAGTGCTGAGTGCCCCTATTGTCATAGGCTATTCTGTGTACAGTGTAAGGTTCCTTGGCATGCAAATATGAACTGTAGGGCATTTCAACGGAGTAATAAAGATTCGGATGACAACTTTCTCAAGTTAGCCAAATCGGAAAAGTGGCAGAAATGTCCCCGGTGCAGTATTTATGTTCAGAAAATTTCTGGATGTATACACGTGTTTTGCAGGTGTGGATGCGACTTTTGCTACAGTTGTGGGATGAAGTATCGGGAAGGACATAAATGCAGAAGACGGTTTAATTGGACCTTTGTGGAACTATTTGCTTGTCTGTTTGAAATGATCGAGGCTATCTGTTCATCTCCCTCTTTGGAAGCTAGTGACAAATTTTAA | 711 | 0.4233 | MFVCGICLDTKLVSKGFKDGKCRLCNHSFCTDCILKYVETLIHRNDLLEMTCPGPNCGIELEPESFRTLLAPEVIDRWEITRCESAIRWSERIYCPFKECSGLLVNEEREVVTSAECPYCHRLFCVQCKVPWHANMNCRAFQRSNKDSDDNFLKLAKSEKWQKCPRCSIYVQKISGCIHVFCRCGCDFCYSCGMKYREGHKCRRRFNWTFVELFACLFEMIEAICSSPSLEASDKF* | 237 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra10g0392 | 236 | Gene3D | - | 136 | 216 | - | - | |
| Vra10g0392 | 236 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 3 | 203 | IPR031127 | GO:0004842|GO:0016567 | |
| Vra10g0392 | 236 | Pfam | IBR domain, a half RING-finger domain | 78 | 138 | IPR002867 | - | |
| Vra10g0392 | 236 | ProSiteProfiles | TRIAD supradomain profile. | 1 | 220 | IPR044066 | - | |
| Vra10g0392 | 236 | ProSitePatterns | Zinc finger RING-type signature. | 25 | 34 | IPR017907 | - | |
| Vra10g0392 | 236 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 3 | 203 | - | - | |
| Vra10g0392 | 236 | SUPERFAMILY | RING/U-box | 88 | 143 | - | - | |
| Vra10g0392 | 236 | SUPERFAMILY | RING/U-box | 151 | 208 | - | - | |
| Vra10g0392 | 236 | ProSiteProfiles | Zinc finger RING-type profile. | 4 | 53 | IPR001841 | - | |
| Vra10g0392 | 236 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 88 | IPR013083 | - | |
| Vra10g0392 | 236 | SMART | ibrneu5 | 76 | 138 | IPR002867 | - | |
| Vra10g0392 | 236 | SUPERFAMILY | RING/U-box | 2 | 86 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra10g0392 | Vra-Chr10 | 9236928 | 9238676 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra10g0392 | 25 | 193 | C3H Transcription Factor Family | AT2G19610 | 32.065 | 3.26e-19 | 84.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra10g0392 | K11975 | - | lang:109340029 | 245.358 |