Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0386 ATGAAGTGGGAAATGGAGATCCTCCCTCCTGCCTCGCCTTACATGTACAGCTCCAATTGGCTTTTGGATGATAACAGGACCAACACCAAATGGACCCCTGCAGAGAACAAGCTGTTTGAGAATGCTCTTGCAGTTTATGATAAGGACACCCCGGATCGGTGGCACAAGGTGGCTGAGATGATACCAGGAAAGACAGTTATGGATGTGGTGAAGCAGTACAAGGAATTGGAAGCAGATGTTTGTAACATAGAAGCTGGCTTGATCCCGATTCCAGGCTACAGTACCACCACCTCACCCTTCACCCTAGACTGGGTGAACACTCCTGGCTACGATGGCTTCAAAGGCCTCACTGCTAAGAGATCTTCCTCTGGCAGACCTCCTGAGCAGGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAGGAACACAAGTTGTTTTTACTGGGGCTGAAGAAGTATGGCAAAGGTGATTGGAGAAACATTTCACGCAATTTTGTGATCACTCGAACGCCAACTCAAGTTGCCAGTCACGCGCAGAAGTACTTCATCAGGCAACTTTCAGGAGGCAAAGACAAGAGGAGGGCTAGCATCCATGACATAACAACAGTGAATCTCACTGAAACCACCAGAACTTCTTCAGAAGACAGCAGCAAAAGATCCACTTCACCACAGCATTCTGTGATGCTCTCACACCAGCAGCAGCAGCAGCAGCAGCCAATTTCCAGTGCTGCCTCATCAGGAATGAATTTCCAATGGAGTAATCAGTCAAATGCAGGAATAGCCATGGCTCTCAATCCTGCACATGAACAAGTGTTTGTCTCCCCTTATGGCCTTAACTCATATGGGTTTAAGGTGCAGGGCCAAAGTCTGCACAGAAGTCCTCTCCACGAGTCTTCTTACCTAGGACCTCAAACACCAAACATGGTTTTCCAAATGCAGCCCTCCCAGCACTATTCCCATGCATGA 963 0.4829 MKWEMEILPPASPYMYSSNWLLDDNRTNTKWTPAENKLFENALAVYDKDTPDRWHKVAEMIPGKTVMDVVKQYKELEADVCNIEAGLIPIPGYSTTTSPFTLDWVNTPGYDGFKGLTAKRSSSGRPPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETTRTSSEDSSKRSTSPQHSVMLSHQQQQQQQPISSAASSGMNFQWSNQSNAGIAMALNPAHEQVFVSPYGLNSYGFKVQGQSLHRSPLHESSYLGPQTPNMVFQMQPSQHYSHA* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0386 320 MobiDBLite consensus disorder prediction 192 247 - -
Vra10g0386 320 Gene3D - 23 90 - -
Vra10g0386 320 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 294 IPR043363 -
Vra10g0386 320 MobiDBLite consensus disorder prediction 117 136 - -
Vra10g0386 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 185 IPR017930 -
Vra10g0386 320 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 132 184 IPR006447 GO:0003677
Vra10g0386 320 SUPERFAMILY Homeodomain-like 29 84 IPR009057 -
Vra10g0386 320 SMART sant 27 79 IPR001005 -
Vra10g0386 320 SMART sant 133 183 IPR001005 -
Vra10g0386 320 PANTHER MYB TRANSCRIPTION FACTOR MYB51 1 294 - -
Vra10g0386 320 ProSiteProfiles Myb-like domain profile. 129 181 IPR001005 -
Vra10g0386 320 Pfam Myb-like DNA-binding domain 136 181 IPR001005 -
Vra10g0386 320 Pfam Myb-like DNA-binding domain 30 74 IPR001005 -
Vra10g0386 320 ProSiteProfiles SANT domain profile. 26 76 IPR017884 -
Vra10g0386 320 ProSiteProfiles SANT domain profile. 137 185 IPR017884 -
Vra10g0386 320 ProSiteProfiles Myb-like domain profile. 23 77 IPR001005 -
Vra10g0386 320 CDD SANT 30 76 IPR001005 -
Vra10g0386 320 CDD SANT 136 181 IPR001005 -
Vra10g0386 320 Gene3D - 135 185 - -
Vra10g0386 320 MobiDBLite consensus disorder prediction 198 247 - -
Vra10g0386 320 SUPERFAMILY Homeodomain-like 130 184 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0386 Vra-Chr10 9136023 9138811 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra10g0386 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0386 - - gmx:778181 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0386 10 9136023 9138811 Vra10g0386 10 9136023 9138811 ECH
Vra10g0386 10 9136023 9138811 Vra6g0617 6 5651002 5652842 ECH