Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0380 ATGGTGCAAATGGATACACTCCCTCTCCTCTTAACCCTAGCTGTTGCTCTTTTATCCACATATTTTCTTTGGTTTTATTTCTTGGCTCGAACCCTAACCGGTCCAAAAGTGTGGCCAATTATTGGCAGCGTTCCAGAATTAGTGGTGAACCGGAATAGGGTTCATGACTGGATCGCTTCAAACCTACGCCAAACAGGAGGTTCCCCCACTTACCAAACATGCACTCTCAGTCTCCCTTTCTTTGCTCGCAAGCAGGGATTCTTTACCGTCACAAGCTGTCCTAGAAACATCGAACACATACTCCGAACCCGGTTCGACAACTACCCTAAAGGGCCGCACTGGCAGGCAGCGTTCCACGACCTTCTAGGGCACGGAATTTTCAACAGCGACGGTGAAACGTGGCTCATGCAGCGGAAAACCGCCGCTCTGGAGTTCACGACCCGAACCCTAAGGCAAGCCATGGCTCGGTGGGTGAACCGGACCATAAAAAACAGGCTATGGTGTATTCTGGACAAAGCTGCTAAGGAAAACGTATCAGTGGATTTGCAAGACCTTCTTCTACGTTTAACCTTTGATAACATTTGTGGACTCACCTTTGGAAAAGACCCTGAAACTCTCTCACCGGATCTCCGTGAAAACCCCTTCACTGTTGCCTTTGACACTGCCACAGAAATCACCTTGCAAAGGCTTTTATATCCGGGCATAATATGGAGATTCGAGAAGCTTCTTGGCATCGGTAAAGAGAAGAAACTGGAGCAGAGTTTGAAGGTCGTCGAAACTTACATGAACGACGCCGTTTCAGCTCGCGAGAAATCGCCTTCCGACGACTTGCTATCGAGGTTCATGAAGAAGCGCGACGCCGCGGGAAAGCCACTGAGCGCCGCCACGCTGCGTCAGATCGCGCTCAACTTCGTCCTGGCCGGCAGGGACACGTCATCAGTGGCGCTAAGCTGGTTCTTCTGGCTCGTCATGAACCACCCCACCGTGGAGGACAAGATCCTCGACGAACTTACGGCGGTGCTCACTTCCACTCGAGGTGGCGACCGGCGGAGGTGGACGGAGGAGGCGGTGGACTTCGAGGAGGCTGAGAGGCTGGTTTACTTGAAAGCCGCGCTGGCCGAAACGCTGCGTTTGTATCCGTCGGTGCCGGAGGATTTCAAGCACGCTGTGGCGGACGACGTGTTGCCGGATGGCACGGCGGTTCCAGCTGGTTCGACTGTGACGTATTCGATTTACGCGATGGGGAGAATGAAGAGTGTGTGGGGAGAGGACTGCATGGAGTTTAAACCAGAGCGGTTTTTATCGGTTAAAGGAGACCGGTTCGAACCGCCAAAAGACGGTTACAAGTTCGTTGCGTTTAACGCTGGACCGAGAACCTGCTTGGGAAAGGACTTGGCTTACCTGCAGATGAAATCTGTGGCTTCAGCTGTGCTTCTGCGTTACCGCCTGTCTCCGGTTCCCGGTCATCGTGTGCAGCAGAAGATGTCACTGACTCTCTTCATGAAGAATGGACTTCGTGTGTTCCTGCAGCCACGTCAGCTTCGTCCACATAATGCCACGTCAGCATAG 1569 0.5277 MVQMDTLPLLLTLAVALLSTYFLWFYFLARTLTGPKVWPIIGSVPELVVNRNRVHDWIASNLRQTGGSPTYQTCTLSLPFFARKQGFFTVTSCPRNIEHILRTRFDNYPKGPHWQAAFHDLLGHGIFNSDGETWLMQRKTAALEFTTRTLRQAMARWVNRTIKNRLWCILDKAAKENVSVDLQDLLLRLTFDNICGLTFGKDPETLSPDLRENPFTVAFDTATEITLQRLLYPGIIWRFEKLLGIGKEKKLEQSLKVVETYMNDAVSAREKSPSDDLLSRFMKKRDAAGKPLSAATLRQIALNFVLAGRDTSSVALSWFFWLVMNHPTVEDKILDELTAVLTSTRGGDRRRWTEEAVDFEEAERLVYLKAALAETLRLYPSVPEDFKHAVADDVLPDGTAVPAGSTVTYSIYAMGRMKSVWGEDCMEFKPERFLSVKGDRFEPPKDGYKFVAFNAGPRTCLGKDLAYLQMKSVASAVLLRYRLSPVPGHRVQQKMSLTLFMKNGLRVFLQPRQLRPHNATSA* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0380 522 Pfam Cytochrome P450 90 501 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0380 522 SUPERFAMILY Cytochrome P450 23 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0380 522 PANTHER CYTOCHROME P450 5 514 - -
Vra10g0380 522 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 453 462 IPR017972 GO:0005506|GO:0016705
Vra10g0380 522 PRINTS P450 superfamily signature 307 324 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0380 522 PRINTS P450 superfamily signature 370 381 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0380 522 PRINTS P450 superfamily signature 451 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0380 522 PRINTS P450 superfamily signature 460 471 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0380 522 PRINTS E-class P450 group I signature 296 313 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0380 522 PRINTS E-class P450 group I signature 316 342 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0380 522 PRINTS E-class P450 group I signature 369 387 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0380 522 PRINTS E-class P450 group I signature 450 460 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0380 522 PRINTS E-class P450 group I signature 460 483 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0380 522 Gene3D Cytochrome P450 28 521 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0380 522 PANTHER CYTOCHROME P450 FAMILY-DEPENDENT FATTY ACID HYDROXYLASE 5 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0380 Vra-Chr10 9046728 9048749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0380 4 512 Cytochrome P450 AT5G58860 75.490 0.0 807
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0380 K15401 - gmx:100787559 942.954