Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0378 ATGGCATCATCCATTGCCACCTTCTTCAACAAGTTCCTTTATCTCCTCATCCTCTTCGTCCACCTTGGCTGCTTCATCTTCACCACCACCGCCGGAGGAAAAAAAGCGCCACCATCAAAGAAACGCAAAATCTCGCCCTCATCCCAACCCTCCTCCCCTTCCCACCCAAAATTCAAAACCCACAAAGCCCTGTCCTCTTCTTGGCATTTCATCAAACACCTTCTTTCCACCAAGTCCTGCAAAACCCCCAAAACCGCCACCTCCCAACTATCCCCTCAATCAACCGCCGCCACCTCCACAATCTCCGTCTCCGCCGCAGCAGCACACTCCCTTGTTTCACTAACACAACCCGACCCGGAAAGAAAACCACCCGGGTCTTGTCCCGAATCCGACATTTCCGCCGACACCAACATCTTCTTCCCTCTCCGCAACGACATCTTCCCCTGCACCGCTTGCGGCGAGATCTTCCAGAAACCCAACCTCTTGGAAACCCACCAAACCCTCAAACACGCGGTTTCGGACCTATCTGGATCCGACCCGGGTCACAACATCGTCCAGATCATCTTCAAATCGGGTTGGCCTGAATCCAAACCCTCCCCCACCATAACCCGCATCCTCAAGATCCACAACAGCCCAAAGATCCTCGCGAAGTTCGAGGAGTACCGGGAGGTCGTCAAGTCCAAAGCGGCGCGTCACGGAGCCCTCACGCGCCGCCGCGACGAGCGCTGCATCGCCGACGGGAACGAGCTCATGCGCTTCCACTGCTCCACGTTCCTTTGCGACTTGGGACACAGCGGGGATTCCTCAATATGTTCTCAGCAATTTTGTAATATATGTGGAATTATTAAGTCGGGGTTTTCCCCGAAACTCGACGGAATTGCCACGCTGTCCACCAGCTGGCGTGCACACGTGGCTATACCGGACGACGTGGAACGAGAATTCCGCTTCATGAATGTCAAACGGGCCATGCTCGTTTGTAGGGTGATTGCGGGTCGGGTTGGATCCGATTCAGACGACGCCGAAAAAGCTGATGGTGGTTTTGATTCGGTAATGGCGAGGTCAGAGACTGGGGTTTACACGCGGCTTGACGAGGAGGAGTTGTTGGTGTTTAATCCTAGGGCTGTTCTTCCTTGCTTCGTGATTGTGTATACTGTGTGA 1158 0.5423 MASSIATFFNKFLYLLILFVHLGCFIFTTTAGGKKAPPSKKRKISPSSQPSSPSHPKFKTHKALSSSWHFIKHLLSTKSCKTPKTATSQLSPQSTAATSTISVSAAAAHSLVSLTQPDPERKPPGSCPESDISADTNIFFPLRNDIFPCTACGEIFQKPNLLETHQTLKHAVSDLSGSDPGHNIVQIIFKSGWPESKPSPTITRILKIHNSPKILAKFEEYREVVKSKAARHGALTRRRDERCIADGNELMRFHCSTFLCDLGHSGDSSICSQQFCNICGIIKSGFSPKLDGIATLSTSWRAHVAIPDDVEREFRFMNVKRAMLVCRVIAGRVGSDSDDAEKADGGFDSVMARSETGVYTRLDEEELLVFNPRAVLPCFVIVYTV* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0378 385 Gene3D - 170 384 - -
Vra10g0378 385 ProSitePatterns Zinc finger C2H2 type domain signature. 149 170 IPR013087 -
Vra10g0378 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 147 171 IPR013087 -
Vra10g0378 385 MobiDBLite consensus disorder prediction 42 59 - -
Vra10g0378 385 PANTHER NUCLEIC ACID BINDING PROTEIN 4 384 - -
Vra10g0378 385 MobiDBLite consensus disorder prediction 31 59 - -
Vra10g0378 385 SUPERFAMILY ADP-ribosylation 174 384 - -
Vra10g0378 385 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0378 Vra-Chr10 9008532 9010507 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0378 91 385 C2H2 Transcription Factor Family AT2G29660 58.553 6.46e-112 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra10g0378 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0378 - - var:108341815 704.901