Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0376 ATGAAAGACATAGAAGGAGGTGGTGCCATTATTAATGGATCTAACCCTTCAAAGTCTTCTGTTGGTCCTCCTTTGACAGCCATAGAAAGGTTTTTGTGGGGACAACAGAGCCATTCCTCTCAGCAACAGCCACAGAATGTTGCAAACAATATCCATGCAAGTGTTTTGGATGGTTTTGGTGGCTCAAACTACAACATTTTTTGGCATAATGGTGGTAGGGAAGTGAACTTTGTTGAAAAGATTTTAGCAAATGAAGTGGAAGCTCTGAACTGGACACAACAAGTCCCTCCACTGTGTTTGACAGAAGATTTGCATGTGTCAGGGAAGAACAGAAAAGGGGTGGGACGAAAACCTAAGGAAGGGTCTTCTGTACCTTGGATCAAAGGCCAGTGGACTGAAGAAGAAGACAGGAAACTGGTAAAGTTGGTGAAGCAACATGGTACAGGAAAATGGTCTCAGATAGCAGAAAATTTGGATGGAAGGGCTGGTAAGCAGTGTAGAGAGAGATGGCATAATCATCTGCGTCCTGATATTAAGAAAGATGCTTGGAGTGAAGAAGAAGAAAAAATCTTAGTAAAATATCATGCGGAGTTCGGAAATCGTTGGGCAGAAATTGCTAAACAAATAAAAGGAAGAACAGAAAATGCAATAAAAAACCATTGGAATGCGACAAAGAGGAGACAAAACTCAAGAAGAAAGAACAAAAGAGCAGGAATAGGAAATGGAAAGCCATTGTCTTCAATTCTGCAAGACTACATCAAAACTCTGTCTCTCACCAACACTTCAACTTCCTCTGTGGAACAAACATTACCATCAAAACACTTATCTCATGTTGATGTTGCCACCAACAACAATTTCTCACTAATGTCTGATGACATTTCCTTCATGCAACAATTTTTCGATCAAAACAATGTCATTGCTGAATCTGTTAAGCAGACCAAAACTTTCAACAACTCTTCTGCACCCTTTGATGCTTATCATCATCAAAGCAGTAACAATACTCACTTTCTCACTGAACTCACTCAATCGGGATCTGTTCTTCATTCCAACCAAATGTCCTTTGATGAGAGTCTTTTCCTCTCTAAAAGGACTCCTTTAGGTTTTGATATCTCTCTCTCTCATTTGCACAATGGAACTGCTGCTTCATCATTTCTCTGCAATAATGGGATTCACAACCAGAACATGGAGTTGCAGGTTGAGAAGCAAAATTGGTTATGGGAAAGAGGGATAGGGATATAG 1239 0.4011 MKDIEGGGAIINGSNPSKSSVGPPLTAIERFLWGQQSHSSQQQPQNVANNIHASVLDGFGGSNYNIFWHNGGREVNFVEKILANEVEALNWTQQVPPLCLTEDLHVSGKNRKGVGRKPKEGSSVPWIKGQWTEEEDRKLVKLVKQHGTGKWSQIAENLDGRAGKQCRERWHNHLRPDIKKDAWSEEEEKILVKYHAEFGNRWAEIAKQIKGRTENAIKNHWNATKRRQNSRRKNKRAGIGNGKPLSSILQDYIKTLSLTNTSTSSVEQTLPSKHLSHVDVATNNNFSLMSDDISFMQQFFDQNNVIAESVKQTKTFNNSSAPFDAYHHQSSNNTHFLTELTQSGSVLHSNQMSFDESLFLSKRTPLGFDISLSHLHNGTAASSFLCNNGIHNQNMELQVEKQNWLWERGIGI* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0376 412 SUPERFAMILY Homeodomain-like 125 221 IPR009057 -
Vra10g0376 412 ProSiteProfiles Myb-like domain profile. 175 225 IPR001005 -
Vra10g0376 412 Gene3D - 127 179 - -
Vra10g0376 412 CDD SANT 182 225 IPR001005 -
Vra10g0376 412 ProSiteProfiles Myb-like domain profile. 128 174 IPR001005 -
Vra10g0376 412 CDD SANT 131 174 IPR001005 -
Vra10g0376 412 Pfam Myb-like DNA-binding domain 131 189 - -
Vra10g0376 412 PANTHER MYB TRANSCRIPTION FACTOR 32 365 - -
Vra10g0376 412 Gene3D - 181 242 - -
Vra10g0376 412 MobiDBLite consensus disorder prediction 1 22 - -
Vra10g0376 412 PANTHER MYB PROTEIN-RELATED 32 365 - -
Vra10g0376 412 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 179 229 IPR017930 -
Vra10g0376 412 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 178 IPR017930 -
Vra10g0376 412 SMART sant 179 227 IPR001005 -
Vra10g0376 412 SMART sant 127 176 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0376 Vra-Chr10 8989156 8991843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0376 21 382 MYB Transcription Factor Family AT5G58850 37.562 6.61e-66 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra10g0376 Myb_DNA-bind_6 2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0376 K09422 - gmx:100786295 420.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0376 10 8989156 8991843 Vra6g0915 6 9767244 9770603 PCT