Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0374 ATGCCCGTCATCGCCGCAAAACGCTCGTTGCGATCTCATCCTTCCTCGCCTCCTCGCAAATCGCCTCGCAGATGCACTGCAGCAACCGCCAATTCCTCCCGCAATGTAAACAATTTCGGCACAGATGAAAACCAAGCTGATCCGGCAGCTGTGAAACCCAGGTGGAATCCCAAAGATGGTGAGCAAATAAAGGCGGTGAAGCTAGCATTGCACTTGTCCACTGCGCCGTCTTCAGTTGTGTGCCGTGAGGAGGAGCAGAATGTTGTTTTGGAGTTCTGCAAAGGGTGCGTTGAGCATAATAAGGCCGGGAGTCTGTACATTTGCGGGTGTCCCGGTACCGGGAAATCGTTGTCTATGGAGAAAGTGAAAGAGCAATTACTCAATTGGTCCAAGGAGGCAGGTCTCCCGCCGCCAGATGTTTTATCCGTGAACTGCACAACTCTTGCTAGCACATCGGATATTTTCACAAAGATGATAGGGTTGAACCAAACACAGGGTAAAAAGGTTTCAGCCTCGCCCTTACAGCAACTTCATAATATGTATTCTCAGAAATCATCTGTCAAGAACATGACATTGATAGTGGCTGACGAATTAGATTATTTGATAACCAAAGACAGAGCCGTTCTTCATGATCTTTTCATGCTCACTACCTTTCCTTTTTCTAGATGTATATTGATAGGTGTAGCGAATGCAATTGACTTAGCTGATCGGTTTCTTCCGAGGCTTACATCATTAAATTGCAAGCCTGTGGTTGTAAATTTCCAGGCTTACTCGAAAGATCAGATCCTCATGATTCTTGAAGAAAGGTTGAAGGAACTTCCTTACATTGTCTTTCAACAGCAGGCCCTGGAACTATGTGCTAGGAAAGTTGCCGCATCTTCTGGAGACATGCGGAATGCCCTTTCTATATGCTGGAGTGCAATCGAGATGCTTGAAGCAGAAATTAGAGAATCTGCGTGCAATTTGAACACTTCATTGGAAGAGATATCATTTTCTCAACAAAATCTTCCCACAGCTCCTGATTGTATGAAAAAACGTGAATTTGATATTGTGAGAACTGATCATATGGCTCGTGCCTTGTCCAAGACTTATAGATCACCGGTGGTGGATACGATACAATCTCTGCCACATCATCAGCAGATTATACTCTGCTCTTCTATGAATCACTTTCGAGAAGCCAAGAAAGATACATTCCTCGGAGAGTTGTATAAATCGTATGTGGGGATATGTAGATCATCTTTAATTCCTCCAGCCGGAATCTTAGAATTTTCGAACATGTGCAGAGTGCTAAGTGACCAGGGTCTTATTAAACTAGGACAATCTCGAGAGGACAAATTAAGAAGAGTGTCGCCTAAAGTAAATGAGGGTGATATTACTTTCGCATTGCAGGGGATACGGTTTTTTCACAACTGTCTTAAATGA 1422 0.4395 MPVIAAKRSLRSHPSSPPRKSPRRCTAATANSSRNVNNFGTDENQADPAAVKPRWNPKDGEQIKAVKLALHLSTAPSSVVCREEEQNVVLEFCKGCVEHNKAGSLYICGCPGTGKSLSMEKVKEQLLNWSKEAGLPPPDVLSVNCTTLASTSDIFTKMIGLNQTQGKKVSASPLQQLHNMYSQKSSVKNMTLIVADELDYLITKDRAVLHDLFMLTTFPFSRCILIGVANAIDLADRFLPRLTSLNCKPVVVNFQAYSKDQILMILEERLKELPYIVFQQQALELCARKVAASSGDMRNALSICWSAIEMLEAEIRESACNLNTSLEEISFSQQNLPTAPDCMKKREFDIVRTDHMARALSKTYRSPVVDTIQSLPHHQQIILCSSMNHFREAKKDTFLGELYKSYVGICRSSLIPPAGILEFSNMCRVLSDQGLIKLGQSREDKLRRVSPKVNEGDITFALQGIRFFHNCLK* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0374 473 PIRSF Cdc6 5 473 IPR016314 GO:0006270|GO:0051301
Vra10g0374 473 SUPERFAMILY "Winged helix" DNA-binding domain 368 471 IPR036390 -
Vra10g0374 473 CDD AAA 85 243 - -
Vra10g0374 473 MobiDBLite consensus disorder prediction 25 44 - -
Vra10g0374 473 Gene3D - 248 371 - -
Vra10g0374 473 PANTHER CELL DIVISION CONTROL PROTEIN 6 HOMOLOG 13 471 - -
Vra10g0374 473 CDD Cdc6_C 376 458 IPR015163 -
Vra10g0374 473 Gene3D - 372 456 IPR036388 -
Vra10g0374 473 MobiDBLite consensus disorder prediction 1 56 - -
Vra10g0374 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 317 IPR027417 -
Vra10g0374 473 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 13 471 - -
Vra10g0374 473 SMART Cdc6_C_2 383 462 IPR015163 -
Vra10g0374 473 Pfam CDC6, C terminal winged helix domain 383 461 IPR015163 -
Vra10g0374 473 Pfam AAA domain 101 217 IPR003593 -
Vra10g0374 473 Gene3D - 60 247 IPR027417 -
Vra10g0374 473 Coils Coil 308 328 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0374 20 472 Core DNA Replication Machinery Family AT2G29680 59.524 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0374 K02213 - gmx:100791200 830.476