Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0370 ATGTCGTACTCACGGAGGTCAAGGTATTCTACTTCGCCTTCTCCTTTACCATATAAGCGATATGGTAGGTCTGTGTCCAGGTCCCTCTCAAGGTCCATGTCCAGAAGCCGTTCAAGGAGTGTATCAAGGGATGCAGAAAATCCAGGAAACAATCTGTATGTGACAGGATTGTCTCCCAGGATCACCAAGAGGGAACTGGAGAAGCATTTTGCTGCCGAGGGGAAAGTGATAGATGTACATCTGGTGGTTGATCCTTGGACAAGGGAATCCCGTGGGTTTGGTTTTGTGACAATGGAGACTGTTGAGGAGGCCGATAGATGTGTAAAGTATTTGAATCGCTCTGTACTTGAAGGGCGTGTTATTACAGTTGAGAAGGCAAGAAGGCGACGTGGTCGAACCCCAACGCCAGGGAAGTATCTAGGGTTGAGAACTGTTCGTGGGCGACGCCGCTCTCCAAGTTACTCTCCTCGTCGTTCCCCTAGCTATTCTCCTTACAGAAGAAGCTACAGTCGGTCTCCCTATTCTTCAGACCGAAGTAGGAGTCGTTCTTACTCTCCTGACTATGGGCGGAGGCGATCCTATTCTCCATATTACTCACAAAGAAGGAGGTCTTACTCTCCATACTACAGCCGGTACAGGTCTTATGTGCGATATGATCATTATCGACACAGGTCATATTCTCGCTCTCGTTCTCCTTATAGCAGGTCTCCTGTTAGCATGCGTGACAGATCATACTCTCCCTATGACTGGCCGGATGGTCGCCCCTACAGAAGGAACCGTTACAGGTCCGTTTCACGAAGTGCCTCACCCAATGATCGCTATCATGGAAGGCATCGTTACAGGTCTGTTTCTCTCAGTGCCTCACCTAGGCCAAGGAGAAGGTCAAGGAGGAGCTACTCACGGAGTGCCACTCCTGTTTCGAAGAGGAGAGATTCTCCAAGTGTGTCTCCCAGGCCAAGGAGGAGTCCTTCAAGAAGCTCCAAGAGAAGTGCCAAATATTCGAAACAGCGGTCAAGGTCATCCAGTGTGGTTGCAAGTTCAAGATCAGTATCCAGGTCTAATACTCCAAGATCTTCCTCTCCTTCAACATGA 1092 0.4927 MSYSRRSRYSTSPSPLPYKRYGRSVSRSLSRSMSRSRSRSVSRDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMETVEEADRCVKYLNRSVLEGRVITVEKARRRRGRTPTPGKYLGLRTVRGRRRSPSYSPRRSPSYSPYRRSYSRSPYSSDRSRSRSYSPDYGRRRSYSPYYSQRRRSYSPYYSRYRSYVRYDHYRHRSYSRSRSPYSRSPVSMRDRSYSPYDWPDGRPYRRNRYRSVSRSASPNDRYHGRHRYRSVSLSASPRPRRRSRRSYSRSATPVSKRRDSPSVSPRPRRSPSRSSKRSAKYSKQRSRSSSVVASSRSVSRSNTPRSSSPST* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0370 363 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 10 306 - -
Vra10g0370 363 CDD RRM_RBMX_like 49 126 - -
Vra10g0370 363 MobiDBLite consensus disorder prediction 336 363 - -
Vra10g0370 363 SUPERFAMILY RNA-binding domain, RBD 40 153 IPR035979 GO:0003676
Vra10g0370 363 MobiDBLite consensus disorder prediction 154 182 - -
Vra10g0370 363 MobiDBLite consensus disorder prediction 1 51 - -
Vra10g0370 363 PANTHER TRANSFORMER-2-RELATED 10 306 - -
Vra10g0370 363 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 121 IPR000504 GO:0003723
Vra10g0370 363 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Vra10g0370 363 MobiDBLite consensus disorder prediction 126 199 - -
Vra10g0370 363 Gene3D - 5 134 IPR012677 -
Vra10g0370 363 MobiDBLite consensus disorder prediction 224 363 - -
Vra10g0370 363 MobiDBLite consensus disorder prediction 300 321 - -
Vra10g0370 363 SMART rrm1_1 51 124 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0370 Vra-Chr10 8862465 8865977 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0370 51 132 Eukaryotic Initiation Factors Gene Family AT2G36660 34.146 2.26e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0370 - - gmx:100808038 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0370 10 8862465 8865977 Vra10g0370 10 8862465 8865977 ECH