Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0368 ATGGACTCGCACTGGAGCTCTCGCCAGACGTTTGAACGCTATGTTTATGATTATCTTGTCAAACGAAACATGCGCCACACTGCTGAGGTTTTCAGCAACGAGACCAACCTTCATCTGGATGCCGCTGCTTTTTCGACTGATGCTGTGGATGTTCCAGAAGGATTTTTGCTGGAGTGGTGGTCTGTCAACAATGATTTTGAATTCTTCAGACAAATGCATGAAAAACGTGGGTTGTTAGGAGGAATGCAAGGACGTAATGCTTTTCAAGGAGTAGGGTCTTCGATAAATGTTCAACCAATGTATCAATTTCCTAATAATTTTAATCCTGTTGAAGCACTCAACATAGGAAGCAACTTGATGCCATCACGTGTAACTGGTGAATGGCCAGTATTTTCCTCACCTTCTGCACACCAAAAAGTAACTGGTGAATGGCCAGTATTTTCCTCACCTTCTGCACTCCAAAAAGTAACTGGTGAATGGCCAGTATTTTCTTCACCTTCTGCACACCAAAAAGTAAGTGGTAAACTGCCACAATTTCTGATCCCATTTTCCCGTCAAGAGGCATTTGGTCAATTGCAACAACTTTCATCTTCACATCAAGACGTTGTGATGACACCAGTAGAGAAAACGACACAGGTTTCCAATGTCAATAGTGCAGGCGCAAATTCTGGATTTATTGAGGAAACAGATCCGCTCATTGAGAATTTATTAAAATCTTTTTGGTTGTTTGAACCTGATGAACCAAGCCTGTTTGACAAGTCAACAGTAGGACAGAGCAGCAGAAATGCCGAGAATTTGGTGGAACGTGGAGTTGGAAACACTAGTATGAATACAATTGCTGGTTCATCACAAGCACTAGAGGATGATAACAAAAGTGACACAAGTGACTGTTCCAGCAGTTTCGAATTTGTTCTTTCTGATGCAGATGGCTCATCAGACCCTCAGTTGGAATCCAATGGAGAAACATAA 969 0.42 MDSHWSSRQTFERYVYDYLVKRNMRHTAEVFSNETNLHLDAAAFSTDAVDVPEGFLLEWWSVNNDFEFFRQMHEKRGLLGGMQGRNAFQGVGSSINVQPMYQFPNNFNPVEALNIGSNLMPSRVTGEWPVFSSPSAHQKVTGEWPVFSSPSALQKVTGEWPVFSSPSAHQKVSGKLPQFLIPFSRQEAFGQLQQLSSSHQDVVMTPVEKTTQVSNVNSAGANSGFIEETDPLIENLLKSFWLFEPDEPSLFDKSTVGQSSRNAENLVERGVGNTSMNTIAGSSQALEDDNKSDTSDCSSSFEFVLSDADGSSDPQLESNGET* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0368 322 ProSiteProfiles LIS1 homology (LisH) motif profile. 7 39 IPR006594 GO:0005515
Vra10g0368 322 MobiDBLite consensus disorder prediction 253 298 - -
Vra10g0368 322 MobiDBLite consensus disorder prediction 303 322 - -
Vra10g0368 322 SMART Lish 7 39 IPR006594 GO:0005515
Vra10g0368 322 Pfam LisH 13 35 IPR006594 GO:0005515
Vra10g0368 322 MobiDBLite consensus disorder prediction 253 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0368 Vra-Chr10 8803049 8821161 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vra10g0368 LisH 1.5e-06 CL0561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0368 - - vra:106776158 649.818