Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0360 ATGGCAGAGCAGAGTGTGGATTGGTGGAAGGAATTGAGTCAGGATTGGTATGACTTGATTGATGTGCCATTCGACAACTTTAGTGTTCCAACCGCCTTTCCTAACAATGTTCTTCCGACCGTTGACGAAGCTCCGCAGGTGTTGCCACCGTCTCAAACATTGGAACACATGCAGTTTCATTCGAACAAAGGAAAAAGGATAACATGGACAAAAGAGGAGCATAGGAGGTTTTTAGAAGGACTTGATAGGTATGGAAAAGGAAATTGGAAAAACATTTCAGCCTACATTCAAACAAAGAGTACAAGTCAAGTTGCAAGCCATGCACAAAAGTATTTTATCCGTCAAAGTAAATCAAAAGAGCAAAAGAAGAGAAAAAGCATTCATGACATGGTTATGGAGAATACTACTCATACTAATGTTCATATTCAAAATTCATCATNTAATANAAATCTTGNAAGTTCAGAATTTTACGAAATGCAACCCTTCAATCCTTACATGAACATGTCTGATCCAGAAGAGCTAAATCATATCAATATGACTTATCAACCACGAGAAGAAATGATGAACCAAAATCATATGAATTTCAACAACATATTTGATCATCCAGCAAACTTTAATCAAATGCAACACTCGCAAGCCATATCCTTCAATCCTTACTTCAACATGCCTCATCCACCAGAGTTAAATCATATCAATACCTTAAATCATCATCCACAAAATAATGGAATACATCCCACACAGTTTAATCAAATGCAACCATCATTTTAG 768 0.3646 MAEQSVDWWKELSQDWYDLIDVPFDNFSVPTAFPNNVLPTVDEAPQVLPPSQTLEHMQFHSNKGKRITWTKEEHRRFLEGLDRYGKGNWKNISAYIQTKSTSQVASHAQKYFIRQSKSKEQKKRKSIHDMVMENTTHTNVHIQNSSXNXNLXSSEFYEMQPFNPYMNMSDPEELNHINMTYQPREEMMNQNHMNFNNIFDHPANFNQMQHSQAISFNPYFNMPHPPELNHINTLNHHPQNNGIHPTQFNQMQPSF* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0360 255 MobiDBLite consensus disorder prediction 232 255 - -
Vra10g0360 255 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Vra10g0360 255 PANTHER TRANSCRIPTION FACTOR KUA1 61 233 - -
Vra10g0360 255 ProSiteProfiles SANT domain profile. 69 116 IPR017884 -
Vra10g0360 255 SMART sant 65 114 IPR001005 -
Vra10g0360 255 SUPERFAMILY Homeodomain-like 63 117 IPR009057 -
Vra10g0360 255 PANTHER TRANSCRIPTION FACTOR SRM1 61 233 - -
Vra10g0360 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 116 IPR017930 -
Vra10g0360 255 ProSiteProfiles Myb-like domain profile. 61 112 IPR001005 -
Vra10g0360 255 MobiDBLite consensus disorder prediction 227 255 - -
Vra10g0360 255 CDD SANT 68 112 IPR001005 -
Vra10g0360 255 Gene3D - 67 117 - -
Vra10g0360 255 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 65 115 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0360 Vra-Chr10 8664579 8665484 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra10g0360 Myb_DNA-binding 1.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0360 - - vra:106774767 498.049