Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0359 ATGGCAGAGCAGAGTTTGGATTGGTGGAAGGAATTGAGTCAGGATTGGTATGACTTGATTGATGNGCCATTNGACAACTTTAGTGTTCCAACCGCCTTTCCTAACAATGTTCTTCCGACCGTTGACGAAGCTCCGCAGATGTTATCATCGTCTCAAACATTGGAACACATGCAGTTTCATTCGAACAAAGGAAAAAGGATAACATGGACAAAAGAGGAGCATAGGAGGTTTTTAGAAGGACTTTATAGGTATGGAAAAGGAAATTGGAAAAACATTTCAGCCTACATTCAAACAAAGAGTACAAGTCAAGTGGCAAGCCATGCACAAAAGTACTTTATCCGTCAAAGTAAATCAAAAGAGCAAAAGAAGAGAAAAAGCATTCATGACATGGTTATGGAGAATACTACTCATACTAATGTTCATATTCAAAATTCATCATATAATAGAAATCTTGCAAGTTCAGAATTTTACGAAATGCAACCCTTCAATCCTTACATGAACATGTCTGATCCAGAAGAGCTAAATCATATGAATATGACTTATCAACCACGAGAAGAAATGATGAACCAAAATCATATGAATTCCAACAACATATTTGATCATCCTGCAAACTTTAATCAAATGCAACACTCGCAAGCCATATCCTTCAATCCTTACATCAACATGCCTCATCCACCAGAGTTAAATCATATCAATACCTTAAATCATCATCCACAAAATAATGGAATAGATCCCACACAGTTTAATCAAATGCAACCACCATTTTAG 768 0.3633 MAEQSLDWWKELSQDWYDLIDXPXDNFSVPTAFPNNVLPTVDEAPQMLSSSQTLEHMQFHSNKGKRITWTKEEHRRFLEGLYRYGKGNWKNISAYIQTKSTSQVASHAQKYFIRQSKSKEQKKRKSIHDMVMENTTHTNVHIQNSSYNRNLASSEFYEMQPFNPYMNMSDPEELNHMNMTYQPREEMMNQNHMNSNNIFDHPANFNQMQHSQAISFNPYINMPHPPELNHINTLNHHPQNNGIDPTQFNQMQPPF* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0359 255 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Vra10g0359 255 PANTHER TRANSCRIPTION FACTOR KUA1 59 252 - -
Vra10g0359 255 SUPERFAMILY Homeodomain-like 63 117 IPR009057 -
Vra10g0359 255 Gene3D - 67 117 - -
Vra10g0359 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 116 IPR017930 -
Vra10g0359 255 ProSiteProfiles Myb-like domain profile. 61 112 IPR001005 -
Vra10g0359 255 MobiDBLite consensus disorder prediction 227 255 - -
Vra10g0359 255 CDD SANT 68 112 IPR001005 -
Vra10g0359 255 SMART sant 65 114 IPR001005 -
Vra10g0359 255 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 65 115 IPR006447 GO:0003677
Vra10g0359 255 MobiDBLite consensus disorder prediction 232 249 - -
Vra10g0359 255 ProSiteProfiles SANT domain profile. 69 116 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0359 Vra-Chr10 8639120 8640025 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra10g0359 Myb_DNA-binding 6.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0359 - - vra:106774767 529.635