Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0344 ATGCAGTCCAAGTCTGAAACTGCAAATCGACTGAGGTCAGATCCTCATTCCTTTCAACCTGGAAGTGTTTATTCCGAGCCTTGGTGGCGTGGTATTGGTTACAATCCCTTGGCCCAAACAATGGCTGGGGCAAATGCATCCAATTCGTCATCTCTTGAGTGCCCTAATGGTGATTCTGAGTCCAATGAAGAAGGCCAGTCTTTGTCCAATAGCGGGAGGAATGAGGAAGATGATGATGCCACTAAAGAACCGCAGCCTGCTGCTCCTAACGAACCAGGAAATTATGGGCAAGAACAACAAGGGACGCAGCATACTGCATCATCTGCACCATCCATGCGTGAAGAATGCCTTACTCAGACACCGCAGCTGGAACTCGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAAGATCCGTATTATGGGGGCATGATGGCAGCTTATGGTCACCAGCAGTTGGGATATGCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTATATGTGAATGCCAAACAGTACCAAGGAATTCTGAGGCGAAGACAAGCCCGTGCTAAAGCAGAACTTGAAAGGAAGCTAATAAAATCTAGAAAGGTTTTCTACCAAAGATGCAACGGAAGTAAAAAAGAAGCCTACCTCCCATATCTTCACGAGTCTCGGCACCAGCATGCTATGAGACGGGCGAGGGGTACTGGAGGACGATTTGCAAAGAAATCCGATGCTGAGGGTTCAAACAACTCAGGCAAGGAAAAGGATAATGGTACTGATTCTGTCCTATCATCACAATCAATTAGTTCATCTGGTTCTGAACCTTTGCATTCTGACTCTGCGGAAACCTGGAATTCTCCTAACATGCAACAAGATGCAAGAGCAGCAAAAGTACAGAACAGGTTCGAAGCACCTGGTTTCCAAAATGGCAGTGGCTCTTACAATAATCATCACAGTTTGCAATCTTCGGTGTATCATTCATCCTCAGGTGAAAGAGTGGAGGAAGGGGACCGTTCAGTTTTATAG 1047 0.4623 MQSKSETANRLRSDPHSFQPGSVYSEPWWRGIGYNPLAQTMAGANASNSSSLECPNGDSESNEEGQSLSNSGRNEEDDDATKEPQPAAPNEPGNYGQEQQGTQHTASSAPSMREECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYGHQQLGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKVFYQRCNGSKKEAYLPYLHESRHQHAMRRARGTGGRFAKKSDAEGSNNSGKEKDNGTDSVLSSQSISSSGSEPLHSDSAETWNSPNMQQDARAAKVQNRFEAPGFQNGSGSYNNHHSLQSSVYHSSSGERVEEGDRSVL* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0344 348 MobiDBLite consensus disorder prediction 1 30 - -
Vra10g0344 348 MobiDBLite consensus disorder prediction 1 20 - -
Vra10g0344 348 Gene3D - 174 251 - -
Vra10g0344 348 MobiDBLite consensus disorder prediction 44 117 - -
Vra10g0344 348 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 246 IPR001289 GO:0003700|GO:0006355
Vra10g0344 348 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 31 346 IPR001289 GO:0003700|GO:0006355
Vra10g0344 348 SMART cbf3 173 249 IPR001289 GO:0003700|GO:0006355
Vra10g0344 348 MobiDBLite consensus disorder prediction 231 348 - -
Vra10g0344 348 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 31 346 - -
Vra10g0344 348 ProSitePatterns NF-YA/HAP2 subunit signature. 179 199 IPR018362 GO:0003677|GO:0016602
Vra10g0344 348 MobiDBLite consensus disorder prediction 92 117 - -
Vra10g0344 348 MobiDBLite consensus disorder prediction 311 336 - -
Vra10g0344 348 MobiDBLite consensus disorder prediction 44 69 - -
Vra10g0344 348 MobiDBLite consensus disorder prediction 261 302 - -
Vra10g0344 348 ProSiteProfiles NF-YA/HAP2 family profile. 174 249 IPR001289 GO:0003700|GO:0006355
Vra10g0344 348 MobiDBLite consensus disorder prediction 70 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0344 Vra-Chr10 8223663 8228078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0344 16 293 CCAAT-HAP2 Transcription Factor Family AT5G12840 50.714 1.49e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vra10g0344 CBFB_NFYA 4.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0344 K08064 - gmx:100808378 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0344 10 8223663 8228078 Vra6g0100 6 718255 721704 PCT