LGRPv2

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra10g0344	ATGCAGTCCAAGTCTGAAACTGCAAATCGACTGAGGTCAGATCCTCATTCCTTTCAACCTGGAAGTGTTTATTCCGAGCCTTGGTGGCGTGGTATTGGTTACAATCCCTTGGCCCAAACAATGGCTGGGGCAAATGCATCCAATTCGTCATCTCTTGAGTGCCCTAATGGTGATTCTGAGTCCAATGAAGAAGGCCAGTCTTTGTCCAATAGCGGGAGGAATGAGGAAGATGATGATGCCACTAAAGAACCGCAGCCTGCTGCTCCTAACGAACCAGGAAATTATGGGCAAGAACAACAAGGGACGCAGCATACTGCATCATCTGCACCATCCATGCGTGAAGAATGCCTTACTCAGACACCGCAGCTGGAACTCGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAAGATCCGTATTATGGGGGCATGATGGCAGCTTATGGTCACCAGCAGTTGGGATATGCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTATATGTGAATGCCAAACAGTACCAAGGAATTCTGAGGCGAAGACAAGCCCGTGCTAAAGCAGAACTTGAAAGGAAGCTAATAAAATCTAGAAAGGTTTTCTACCAAAGATGCAACGGAAGTAAAAAAGAAGCCTACCTCCCATATCTTCACGAGTCTCGGCACCAGCATGCTATGAGACGGGCGAGGGGTACTGGAGGACGATTTGCAAAGAAATCCGATGCTGAGGGTTCAAACAACTCAGGCAAGGAAAAGGATAATGGTACTGATTCTGTCCTATCATCACAATCAATTAGTTCATCTGGTTCTGAACCTTTGCATTCTGACTCTGCGGAAACCTGGAATTCTCCTAACATGCAACAAGATGCAAGAGCAGCAAAAGTACAGAACAGGTTCGAAGCACCTGGTTTCCAAAATGGCAGTGGCTCTTACAATAATCATCACAGTTTGCAATCTTCGGTGTATCATTCATCCTCAGGTGAAAGAGTGGAGGAAGGGGACCGTTCAGTTTTATAG	1047	0.4623	MQSKSETANRLRSDPHSFQPGSVYSEPWWRGIGYNPLAQTMAGANASNSSSLECPNGDSESNEEGQSLSNSGRNEEDDDATKEPQPAAPNEPGNYGQEQQGTQHTASSAPSMREECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYGHQQLGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKVFYQRCNGSKKEAYLPYLHESRHQHAMRRARGTGGRFAKKSDAEGSNNSGKEKDNGTDSVLSSQSISSSGSEPLHSDSAETWNSPNMQQDARAAKVQNRFEAPGFQNGSGSYNNHHSLQSSVYHSSSGERVEEGDRSVL*	349

Showing 1 to 1 of 1 entries

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vra10g0344	348	MobiDBLite	consensus disorder prediction	1	30	-	-
Vra10g0344	348	MobiDBLite	consensus disorder prediction	1	20	-	-
Vra10g0344	348	Gene3D	-	174	251	-	-
Vra10g0344	348	MobiDBLite	consensus disorder prediction	44	117	-	-
Vra10g0344	348	Pfam	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	176	246	IPR001289	GO:0003700\|GO:0006355
Vra10g0344	348	PANTHER	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	31	346	IPR001289	GO:0003700\|GO:0006355
Vra10g0344	348	SMART	cbf3	173	249	IPR001289	GO:0003700\|GO:0006355
Vra10g0344	348	MobiDBLite	consensus disorder prediction	231	348	-	-
Vra10g0344	348	PANTHER	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9	31	346	-	-
Vra10g0344	348	ProSitePatterns	NF-YA/HAP2 subunit signature.	179	199	IPR018362	GO:0003677\|GO:0016602

Showing 1 to 10 of 16 entries

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra10g0344	Vra-Chr10	8223663	8228078	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra10g0344	16	293	CCAAT-HAP2 Transcription Factor Family	AT5G12840	50.714	1.49e-83	253

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YA	Vra10g0344		CBFB_NFYA	4.4e-23	No_clan

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra10g0344	K08064		-	gmx:100808378	613.994

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra10g0344	10	8223663	8228078	Vra6g0100	6	718255	721704	PCT

Showing 1 to 1 of 1 entries