Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0337 ATGGGGCGTATTCCATGCTGTGAGAAGGACAACGTGAAAAGAGGACAGTGGACACCTGAGGAAGATCACAAACTCTCCTCCTACATTGCTCAACATGGCACTCGCAACTGGCGTCTCATTCCCAAGAATGCTGGTCTCCAGAGATGTGGGAAGAGCTGCAGGCTAAGGTGGACTAATTACCTTCGTCCTGATCTCAAACATGGCCAATTCTCGGATTCAGAAGAGCAAACCATTGTCAAGCTTCATTCAGTTTTCGGTAACAGATGGTCACTGATAGCAGCCCAGCTGCCAGGACGCACTGACAATGATGTCAAAAACCACTGGAACACCAAGCTAAAAAAGAAACTGTCAGGTATGGGTATAGACCCTGTAACCCACAAGCCATTTTCCCATCTAATGGCCGAAATTGCTACCACATTGGCACCTCCACAGGCAGCTCACTTGGCTGAAGCAGCCCTTGGCTGTTTCAAAGATGAAGTGCTCCACCTTCTTACCAAGAAGCCAATTAACTTCCATGGCCAGCATTCCGCTGCAGCACTGGGGAATAACTTCACTGATTACATTAATTGTAAGTCAGATGAAAAGGACGCAACTGTTGAGAAGATCAAGTTTGACCTATCCAAGGCCATGCAACAAGAATCTGAAATGATGCCTTCAAATAAACCTTGGGACTCCACCGCAAATACATCTGCAAGTTTTGTGATGCCATATAGTGTTTTCCCTACAATATCTGGTTATCAGTTCTCCCCGTCATCTTTCGGCAATAAAGGGGATGCATCTCCATGGAGCCAAAGTGTATGCACTGGAAGCACATGCACAGCCATGGATCGGCAGAGCCAATTGCATGAAAAACTTGAAGAGGAAAATGGTGATGATTCTGAGGCCACGAAGGAAATTCGAAATCTATCCAATATATTCAACTCAGATTGTGTCGTGTGGGATCTACCAGCCGATGATTTAATTAACCCCATGGTTTAA 978 0.4571 MGRIPCCEKDNVKRGQWTPEEDHKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGQFSDSEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQAAHLAEAALGCFKDEVLHLLTKKPINFHGQHSAAALGNNFTDYINCKSDEKDATVEKIKFDLSKAMQQESEMMPSNKPWDSTANTSASFVMPYSVFPTISGYQFSPSSFGNKGDASPWSQSVCTGSTCTAMDRQSQLHEKLEEENGDDSEATKEIRNLSNIFNSDCVVWDLPADDLINPMV* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0337 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra10g0337 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vra10g0337 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vra10g0337 325 CDD SANT 70 112 IPR001005 -
Vra10g0337 325 CDD SANT 17 61 IPR001005 -
Vra10g0337 325 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Vra10g0337 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra10g0337 325 PANTHER F14D16.11-RELATED 1 325 - -
Vra10g0337 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vra10g0337 325 Gene3D - 14 66 - -
Vra10g0337 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra10g0337 325 SMART sant 13 63 IPR001005 -
Vra10g0337 325 SMART sant 66 114 IPR001005 -
Vra10g0337 325 PANTHER TRANSCRIPTION FACTOR MYB80 1 325 - -
Vra10g0337 325 Gene3D - 69 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0337 Vra-Chr10 8135579 8137519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0337 1 325 MYB Transcription Factor Family AT5G56110 56.798 2.78e-119 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra10g0337 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0337 K09422 - gmx:100800764 613.994