LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra10g0328	ATGGGGAGCGACAGCGAGACAGAGAGATCGGTGCAAAAGGAGAAGGAGAAGAAGAAGATGCAGTCTCTAGCTCCCATAGCTAAGCCGCTTGCTGGCAAGAAGCTTTGCAAGCGTACCCTTAAACTTGTTCGCAGAGCCGCCGAACACAAATGCTTAAAGAGAGGAGTCAAGGAGGTCGTTAAAAGCATTAGGAGAGGTCAGAAAGGATTCTGTGTTATCGCTGGCAACATTTCGCCGATTGATGTCATCACCCATGTTCCCGTTCTCTGTGAAGAGTCTGACATTCCATACGTATATGTCCCATCCAAAGAAGATCTGGCTGGTGCAGGAGCAACAAAGAGGCCTACTTGCTGTGTTTTGGTACAGACGAAACCTGCAAAGGGTGAATTAGAGCATGAGGAACAAGAGAAACTAAAGTCTGACTATGATCAAGTTGTGTCGGAAGTTAAGAAGCTTGCAGCTTCACTTTTTTGA	474	0.4662	MGSDSETERSVQKEKEKKKMQSLAPIAKPLAGKKLCKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGQKGFCVIAGNISPIDVITHVPVLCEESDIPYVYVPSKEDLAGAGATKRPTCCVLVQTKPAKGELEHEEQEKLKSDYDQVVSEVKKLAASLF*	158

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra10g0328	157	PRINTS	Ribosomal protein L7A/RS6 family signature	52	66	IPR018492	-
	Vra10g0328	157	PRINTS	Ribosomal protein L7A/RS6 family signature	71	84	IPR018492	-
	Vra10g0328	157	PRINTS	Ribosomal protein L7A/RS6 family signature	87	97	IPR018492	-
	Vra10g0328	157	PRINTS	Ribosomal protein L7A/RS6 family signature	97	111	IPR018492	-
	Vra10g0328	157	PANTHER	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	2	155	-	-
	Vra10g0328	157	PRINTS	High mobility group-like nuclear protein signature	25	38	IPR002415	GO:0003723\|GO:0005730
	Vra10g0328	157	PRINTS	High mobility group-like nuclear protein signature	38	53	IPR002415	GO:0003723\|GO:0005730
	Vra10g0328	157	PRINTS	High mobility group-like nuclear protein signature	55	65	IPR002415	GO:0003723\|GO:0005730
	Vra10g0328	157	PRINTS	High mobility group-like nuclear protein signature	99	111	IPR002415	GO:0003723\|GO:0005730
	Vra10g0328	157	Pfam	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	40	124	IPR004038	-
	Vra10g0328	157	SUPERFAMILY	L30e-like	22	131	IPR029064	-
	Vra10g0328	157	PANTHER	-	2	155	-	-
	Vra10g0328	157	MobiDBLite	consensus disorder prediction	1	22	-	-
	Vra10g0328	157	MobiDBLite	consensus disorder prediction	1	23	-	-
	Vra10g0328	157	Gene3D	-	17	153	IPR029064	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra10g0328	Vra-Chr10	8011390	8012770	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra10g0328	52	151	Cytoplasmic Ribosomal Protein Gene Family	AT2G47610	26.733	3.61e-07	46.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra10g0328	K11129		-	gmx:100305515	285.804