Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0326 ATGACGACGCCGCTGAATCTCGCCGCCGGAGATTTTTCGTTCCATTTCTCCTCATCCACTGGTTCTCACCGCCGGAACTCTGTCCGAGCCGTTTCGGCGGAAGCGGTCCAGGTGCGGCTGCCGGCGCCGAGCTTCTACGAGGTGCTGCGAATCCAGCGCCACGCTTCGCCGACGGAGATCAAGTCTGCTTACCGGAGCCTCGCGAAGCTCTATCATCCCGACGCGGTGGTGCGGCATGCCACAGAGGACGTTAGAGCTGGCGAAGCCGCCGACGGAAACTTCATCCAGATCCGAAGCGCGTATGAGACGCTATCGGATCCATCGGCAAGGGCGACGTACGATCGAACGCTGACGGCGGTGCACGGCGGAAGGCACCGCCAGTTTCCGGTTCCTCTTAGTCGGAATCACTCGTCGACGTTTTACGCAACACGAAGATGGGAAACGGACCAATGCTGGTAG 459 0.6078 MTTPLNLAAGDFSFHFSSSTGSHRRNSVRAVSAEAVQVRLPAPSFYEVLRIQRHASPTEIKSAYRSLAKLYHPDAVVRHATEDVRAGEAADGNFIQIRSAYETLSDPSARATYDRTLTAVHGGRHRQFPVPLSRNHSSTFYATRRWETDQCW* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0326 152 ProSiteProfiles dnaJ domain profile. 44 117 IPR001623 -
Vra10g0326 152 PRINTS DnaJ domain signature 46 64 IPR001623 -
Vra10g0326 152 PRINTS DnaJ domain signature 64 79 IPR001623 -
Vra10g0326 152 PRINTS DnaJ domain signature 89 109 IPR001623 -
Vra10g0326 152 CDD DnaJ 45 106 IPR001623 -
Vra10g0326 152 ProSitePatterns Nt-dnaJ domain signature. 94 113 IPR018253 -
Vra10g0326 152 Gene3D DnaJ domain 30 128 IPR036869 -
Vra10g0326 152 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 12 152 - -
Vra10g0326 152 SUPERFAMILY Chaperone J-domain 36 118 IPR036869 -
Vra10g0326 152 SMART dnaj_3 43 109 IPR001623 -
Vra10g0326 152 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 12 152 - -
Vra10g0326 152 Pfam DnaJ domain 45 114 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0326 Vra-Chr10 7965151 7965914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0326 46 114 C2H2 Transcription Factor Family AT1G74250 44.928 3.54e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0326 - - var:108320973 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0326 10 7965151 7965914 Vra6g0106 6 758584 759273 PCT