Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0319 ATGAGCGATTCTGCATACAGAGTCGAAACCACACCACGCCTTGCTCAATGGAGAATCGAAAACTTGGCTTCTTGCACTTACCGAAAATCCGATCCTTTCAAGATCGGAAAGTGGAACTGGCATTTGTCTGTGGAGAAGAACAGGGTTTTGTTTGTTAAATTGTTTCCAGAAATATCGAATCTTACAAGAGACAACCCTCCAATTGCATCTTTCATCATTCGGGTTGTAAGTTCTGTTGGAGATCGCAGGGCCATCATACACCCAGAAATAAAGGACAAAGTTCTAAAGAACAACGAGGATTTTGTTTGGGCAATTGAGGTTCCACTAACTGGGAAATTCATTATTGACGTTGAGTTTCTAGATTTGAAGACTGCATCACCAAGCAGTGGAGAACCTTGTTCCATTTGGGCAGAAGGATTTACTCAGCAAAGATCAAATGCAAATGCCATAGAGTGTCTTGGTAGAATGCTAACAGAAGGAATCCACACTGACATCACCATCAATGTTTCTGATGGAAGTATTGGAGCTCATAGAGCTGTTCTTGCTGCAAGATCACCCGTATTCCGCAGCATGTTTTCACACAATCTTCAAGAGAAAGAGTTGTCAACCATAAACATCTCAGATATGTCACTTGATTCATGCCAGACTTTTCTCAATTATCTCTATGGAATCATCAAACATGAAGAGTTTCTGATGCATAGGCTGGCCCTTCTTCGTGCAGCTGACAAGTATGACATATCTGATCTAAGAGATGCATGCCATGAGAGTCTTCTTGAAGACATTGACACAAAAAATGTACTTGAGAGGCTCCAAAATGCTTCTCTATATCAGTTGATGAAACTGAAGATGACTTGTATTCGGTATCTTGTGAAGTTTGGCAAAATATATGAAATCCGTGATGATTTCAACACCTTTTTGCATAATGCAGATAGGGATCTGATTGCTGAAGTCTTCCATGAAGTTCTTGATGCTTGGAAAGGATTTTGA 987 0.4032 MSDSAYRVETTPRLAQWRIENLASCTYRKSDPFKIGKWNWHLSVEKNRVLFVKLFPEISNLTRDNPPIASFIIRVVSSVGDRRAIIHPEIKDKVLKNNEDFVWAIEVPLTGKFIIDVEFLDLKTASPSSGEPCSIWAEGFTQQRSNANAIECLGRMLTEGIHTDITINVSDGSIGAHRAVLAARSPVFRSMFSHNLQEKELSTINISDMSLDSCQTFLNYLYGIIKHEEFLMHRLALLRAADKYDISDLRDACHESLLEDIDTKNVLERLQNASLYQLMKLKMTCIRYLVKFGKIYEIRDDFNTFLHNADRDLIAEVFHEVLDAWKGF* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0319 328 PANTHER OS08G0495500 PROTEIN 1 328 - -
Vra10g0319 328 SUPERFAMILY POZ domain 147 259 IPR011333 -
Vra10g0319 328 Pfam BTB/POZ domain 156 259 IPR000210 GO:0005515
Vra10g0319 328 Gene3D Potassium Channel Kv1.1; Chain A 140 291 IPR011333 -
Vra10g0319 328 CDD BTB_POZ_ZBTB_KLHL-like 162 244 - -
Vra10g0319 328 ProSiteProfiles BTB domain profile. 163 222 IPR000210 GO:0005515
Vra10g0319 328 PANTHER OS08G0495500 PROTEIN-RELATED 1 328 IPR044714 -
Vra10g0319 328 SMART BTB_4 163 261 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0319 Vra-Chr10 7887364 7890091 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vra10g0319 BTB 1.1e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0319 K10523 - gmx:100790186 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0319 10 7887364 7890091 Vra6g0916 6 9801651 9805081 PCT