Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0316 ATGGATGCTAAGTCGGCTGTAGAATTAATGGAGTCTTCTAACGAGGTTCATTTTTCTGGATTTCACATGGATGGTTTTGAGCAAAGAAAGGACAGCATAGAACCACCAACAACCTCGGAAACTGACATGTATAAACAACCTTTTGTCATAGGTGTTGCTGGGGGTGCAGCATCTGGCAAAACAGCAGTTTGTGATATGATCATTCAACAGCTTCATGATCAACGAGTTGTACTTGTTAATCAGGATTCCTTTTACCATAGCTTGTCTGAGGAGGAACTTACACGAGTACAGGATTACAACTTTGACCACCCTGATGCTTTTGATACCGAGCAATTGCTTCGCGTTATGGACAAGTTGAAGCATGGTGAAGCAGTAGATATTCCGAAGTATGATTTTAAGACTTACAAGAGTGATGTGTTAAGAAGGGTGAACCCTTCAGATGTCATAATTATAGAAGGCATCCTTGTTTTCCATGATCCACGTGTCCGGGAGTTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGATTGGCAAGAAGGATTAGGCGTGATACTAATGAGAAGGGTCGGGATATTGGAGCAGTTCTTGATCAGTATTCAAAATTTGTGAAGCCAGCTTTTGATGACTTTATTCTTCCAACAAAGAAGTATGCTGATATAATTATACCCCGTGGAGGAGATAATCATGTGGCCATTGATTTGATTGTACAGCATATCCGCACAAAGCTAGGTCAGCATGACCTGTGTAAAATATATCCAAATTTATATGTCATTCAATCAACTTTTCAGATACGGGGTATGCATACGCTGATACGTGATGCTCAAACAACAAAACATGATTTTATATTTTACTCTGATCGGTTGATTCGATTGGTTGTTGAACATGGTTTGGGGCATCTGCCATTTACAGAAAAACAAGTAGTCACTCCCACTGGTTCAGTATACACTGGTGTTGATTTTTGTAAAAGGTTGTGCGGTGTCTCTGTAATCAGAAGTGGGGAGAGCATGGAGAATGCTTTGAGAGCATGCTGCAAAGGTATCAAGATTGGTAAAATTCTAATTCACAGGGAAGGCGACAACGGTCAGCAGCTAATATATGAAAAGCTGCCAAATGATATCTCAGACAGGCATGTATTACTGTTGGACCCTATACTTGGCACAGGTAATTCTGCTGTTCAAGCAATTTCTTTACTCATAAGAAAAGGTGTACCTGAATCCAACATTATATTTCTTAATCTCATATCTGCTCCTAAAGGTGTGCATGTTGTATGCAAAAGTTTTCCAAGAATAAAGATAGTAACATCTGAGATTGAAATCGGTTTGAATGAAGATTTCCGTGTCATACCTGGCATGGGGGAGTTTGGAGATAGGTACTTTGGAACAGATGATGATGATGAAGAACAAATGGTTGTTTCTTCACAGTAG 1434 0.3961 MDAKSAVELMESSNEVHFSGFHMDGFEQRKDSIEPPTTSETDMYKQPFVIGVAGGAASGKTAVCDMIIQQLHDQRVVLVNQDSFYHSLSEEELTRVQDYNFDHPDAFDTEQLLRVMDKLKHGEAVDIPKYDFKTYKSDVLRRVNPSDVIIIEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTNEKGRDIGAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDAQTTKHDFIFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLIRKGVPESNIIFLNLISAPKGVHVVCKSFPRIKIVTSEIEIGLNEDFRVIPGMGEFGDRYFGTDDDDEEQMVVSSQ* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0316 477 PRINTS Uridine kinase signature 47 64 - -
Vra10g0316 477 PRINTS Uridine kinase signature 77 88 - -
Vra10g0316 477 PRINTS Uridine kinase signature 122 137 - -
Vra10g0316 477 PRINTS Uridine kinase signature 177 187 - -
Vra10g0316 477 PRINTS Uridine kinase signature 191 202 - -
Vra10g0316 477 PRINTS Uridine kinase signature 213 226 - -
Vra10g0316 477 Pfam Uracil phosphoribosyltransferase 263 464 - -
Vra10g0316 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 238 IPR027417 -
Vra10g0316 477 Gene3D - 43 248 IPR027417 -
Vra10g0316 477 PANTHER URIDINE KINASE 15 467 - -
Vra10g0316 477 TIGRFAM udk: uridine kinase 46 245 IPR000764 -
Vra10g0316 477 CDD PRTases_typeI 322 437 IPR000836 -
Vra10g0316 477 Pfam Phosphoribulokinase / Uridine kinase family 49 233 IPR006083 GO:0005524|GO:0016301
Vra10g0316 477 CDD UMPK 49 245 IPR000764 -
Vra10g0316 477 PANTHER URIDINE KINASE 15 467 - -
Vra10g0316 477 Gene3D - 249 464 IPR029057 -
Vra10g0316 477 SUPERFAMILY PRTase-like 248 465 IPR029057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0316 Vra-Chr10 7845959 7853243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0316 1 467 PRT Gene Family AT4G26510 83.263 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0316 K00876 - gmx:100792258 910.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0316 10 7845959 7853243 Vra6g0110 6 771464 779127 PCT