Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0315 ATGCCACAAGAGAGTTGCCAAAACTCATTTTTCACATCTCCTTCAAAGAGAGGATTGAAGGGTTTGGTGGTCACCACCATGAACAAGGAGGCTTCATGCACTGTCACAGAGGAAGGTTTCAATGACAATGAATTGGCACAGAGGAAGGCAGAGGAAGCAGCTTGGAGAAGATACAAAGCAACAGAATGGCTACGCCAAATGGACAATGTTGCATCATTGTCACTCACTGAAACACCCTCGGAAGAAGACTTTTGCCTTGCTCTACGCAATGGTCTCATTCTCTGCAATGTCCTCAACAAAGTCAACCCCGGTGCTGTTCTCAAGGTGGTGGAGAATCCTGGGCTTGCTGTTCAATGTGCAGAGGGTGCGGCCCACTCAGCAATTCAGTATTTTGAAAACATGAGGAATTTCTTAGAGGCTGTTAAGGAGATGCAGCTTCTCACATTTGAAGCATCTGATTTGGAGAAGGGAGGTTCATCCAATAAAGTTGTGGACTGCATTCTATGTTTGAAGGGGTTTTATGAATGGAAGTTATCTGGTGGGGTTGGTGTGTGGAGGTATGGTGGAACTGTGAGGATCACTTCCTTTCCAAAGAAGTCTCCTTCCTCCATAGTTGGCAGTGAAAGTGCTGATGAATCATTAGATGAGTCAGAATCATCACAGTATGAACAACTGCTTGAATTTCTTCAATTATCTGAAGAGTTCTTGATTGAAGAAACCAGAACTTCCAATGCTTTGGCTTTCCTTTATGATCACTTTGGACTCAGACTTCTTCAGGCTTACCTTAGAGAGGCCAATGGGATTGAAGATCTGCCTCTGAATGCAATGGTAATTGATACCTTACTCAGCAAGGTAGTCAAGGATTTCTCGTCTTTGCTTGTTTCTCAAGGCACTCAGCTTGGACTTTTTTTAAAGAAAATTTTGAAAGGTGACATGGGTTGTCTCTCAAAGAGAGAGTTCATAGAAACCATCTCACTATATCTTAACCAAAGAAGTAGCTTGGCATCAAATGACTTCTCCAAATTCTGCAATTGTGGTGGAAAACGTGATAGTATTCAACAAAATGCCAATTATTCTGCAAAGTATGCTGAAGTAATTAATACTCAACAGAAACAACTTGAGGGTATGAAGTACTTTTTTAAAGAAACAAAATTGGAGGTCAAACAAATTCAATCAGAGTGGGAAGAAGAATTGAGTAGGCTGGAGGATCATATCAAAAGCCTTGAAGTGGCCTCCACTTCCTACCACAAAGTTTTGGAGGAGAACCGCCTTCTTTACAATGAAGTACAAGACCTTAAAGGAGCCATCAGGGTGTATTGTAGAGTGAGGCCATTCTTACCAGGACAATCAAACGGGCAGTCTACGGTGGACTATATTGGAGAAAATGGAGATTTGATGATCATAAATCCCCTTAAGCATGGAAAAGATGCTAGACGAGTATTTTCATTCGATAAGGTTTTTGGAACAACTGTAACACAAGAACAAATTTATGCTGACGCTCAGCCCTTGATCAGATCCGTTCTAGATGGTTATAACGTATGCATCTTTGCATACGGGCAGACTGGCTCCGGGAAAACATACACAATGAGTGGACCTGATCTTACAACAGAAGAGACATGGGGTGTAAACTACAGGGCTTTGGGTGATTTATTTCATATATCAAAGGAAAGGTCTGATTCTGTAAAATATGAAGTTTTCGTTCAGATGATTGAAATATACAATGAACAAGTGAGAGATTTGCTAGTCAGCGATGGCTCTAACAGAAGATTAGACATACGAAACAATTCTCAAATGAATGGCATCAATGTGCCTGATGCATTTTTAGTTCCGGTTACCTGTACTCAAGATGTTCTAGACTTGATGAGAATTGGTCAGAAGAACCGTGCCGTGGGTGCTACAGCTCTAAATGAGAGAAGCAGTCGTTCCCATAGTGTTTTGACTGTTCATGTTAGAGGAAGGGAGTTAGTTTCCAACTCCATTCTAAGAGGTTGTCTCCATCTTGTGGATTTGGCTGGAAGTGAGAGGGTTGACAAATCTGAGGCAGTAGGTGAGAGACTAAAGGAAGCGCAACATATAAATAGATCACTTTCTGCACTTGGGGATGTTATCTCTGCCTTGGCACAGAAGAGTCCACATATCCCTTATAGAAATAGCAAGCTCACACAAGTGTTACAAGATTCTTTAGGAGGGCATGCAAAAACTTTGATGTTTGTTCATGTAAATCCTGAACTTAATGCTTTTGGAGAGACAATTAGCACACTCAAATTTGCTGAGAGGGTTTCATCCATTGAACTTGGGGCTGCTCAATCTAACAAGGAAACTGGTGAAATCCGAGAACTAAAGGAAGAGATATCAAATCTCAAATTGGCATTGGAGAGGAAGGAAGCAGAACTGGATCAGTGGAAGGCTGGGAATGCTAGAAACGGCATTGATTCTCAAAAACCAAGAGCTGTTTCACCTTTTCAATTACCAAAATATGGTACCAGTGGCAACATGAAGCATGAAACTGGTCAAAGACTTATGGATGATAGAAGCTTGGAGTCTAGAAGTTGCTCTTCAGGTAAGCAAAGAAGGTCAAGGTTTCCCTCAACACTAATGGAGAAGGATTCTATGCCAAAAATGTCTTTTCCGACTGAAGAAAAGTTAGTCAGCTCAGTGAAGGGAAGATCACCATCTCCTCCGGTGAGAAGATCACAATCCAATGATAGAGGGACAGTCATTAAAAACAAAGTAAAAACTGAAACAATGGACAACCAACCAATATTAAAGCATCCATTTCCAGCTGCCAACAAATCCCTTGTCACAATGCCAGTGGTTGCATCCACTGACTCAAGAATGTATGTGAATTCACAAGAGACTGTAAAACATGAAAACATTTCAGAAACAATCTTCAACCTCCAGAAATTCAACTATAAGAAAGTTCATCAAGAACATGAAGAGGAACAATTCAAGCAAGCACTTAGTGCAGTAAGACAAGGTGCCATCAGAAAAAGCAAGGTTGAGAGTAAGGCTAAGCCCAAGCATAATCAACTATCACCCTTCAAGATTCAAAAGCCTGATTTGACCTCACCATTCATTCCTGACATGGAATTTGCTGGTGAAAGTAATGTGGAGTCACCTCCAAAGAATGATTACTCTGAGGCTGAAAATGATCTTATATTTATGGAGTCTGCTGTCCATGGTGCTTTAAGTCTCAAAAAGATACGTCAGAACTTTGCAAGGAATTTTCAGAACCTCGAATCAAGAGGAATAGTTCAAGCAGGAGAACATTTATTGGCTAGCAAAGTTGAAAACAAAGTTTTGAATGGTTCAGCCAGCAATCTTAAAGAAGGAAGCAATGCATCCACGCCTGAATTTAGAAGAAGCAGATCTACCCCACGTGGAAAGTTTTTTGGTTTATCTTGA 3405 0.4091 MPQESCQNSFFTSPSKRGLKGLVVTTMNKEASCTVTEEGFNDNELAQRKAEEAAWRRYKATEWLRQMDNVASLSLTETPSEEDFCLALRNGLILCNVLNKVNPGAVLKVVENPGLAVQCAEGAAHSAIQYFENMRNFLEAVKEMQLLTFEASDLEKGGSSNKVVDCILCLKGFYEWKLSGGVGVWRYGGTVRITSFPKKSPSSIVGSESADESLDESESSQYEQLLEFLQLSEEFLIEETRTSNALAFLYDHFGLRLLQAYLREANGIEDLPLNAMVIDTLLSKVVKDFSSLLVSQGTQLGLFLKKILKGDMGCLSKREFIETISLYLNQRSSLASNDFSKFCNCGGKRDSIQQNANYSAKYAEVINTQQKQLEGMKYFFKETKLEVKQIQSEWEEELSRLEDHIKSLEVASTSYHKVLEENRLLYNEVQDLKGAIRVYCRVRPFLPGQSNGQSTVDYIGENGDLMIINPLKHGKDARRVFSFDKVFGTTVTQEQIYADAQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPDLTTEETWGVNYRALGDLFHISKERSDSVKYEVFVQMIEIYNEQVRDLLVSDGSNRRLDIRNNSQMNGINVPDAFLVPVTCTQDVLDLMRIGQKNRAVGATALNERSSRSHSVLTVHVRGRELVSNSILRGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSPHIPYRNSKLTQVLQDSLGGHAKTLMFVHVNPELNAFGETISTLKFAERVSSIELGAAQSNKETGEIRELKEEISNLKLALERKEAELDQWKAGNARNGIDSQKPRAVSPFQLPKYGTSGNMKHETGQRLMDDRSLESRSCSSGKQRRSRFPSTLMEKDSMPKMSFPTEEKLVSSVKGRSPSPPVRRSQSNDRGTVIKNKVKTETMDNQPILKHPFPAANKSLVTMPVVASTDSRMYVNSQETVKHENISETIFNLQKFNYKKVHQEHEEEQFKQALSAVRQGAIRKSKVESKAKPKHNQLSPFKIQKPDLTSPFIPDMEFAGESNVESPPKNDYSEAENDLIFMESAVHGALSLKKIRQNFARNFQNLESRGIVQAGEHLLASKVENKVLNGSASNLKEGSNASTPEFRRSRSTPRGKFFGLS* 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0315 1134 ProSiteProfiles Kinesin motor domain profile. 435 763 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra10g0315 1134 PANTHER KINESIN-LIKE PROTEIN KLP-3 21 1129 - -
Vra10g0315 1134 Coils Coil 391 411 - -
Vra10g0315 1134 PRINTS Kinesin heavy chain signature 510 531 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra10g0315 1134 PRINTS Kinesin heavy chain signature 633 650 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra10g0315 1134 PRINTS Kinesin heavy chain signature 664 682 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra10g0315 1134 PRINTS Kinesin heavy chain signature 713 734 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra10g0315 1134 MobiDBLite consensus disorder prediction 805 906 - -
Vra10g0315 1134 CDD KISc_C_terminal 433 765 - -
Vra10g0315 1134 MobiDBLite consensus disorder prediction 1105 1121 - -
Vra10g0315 1134 Coils Coil 770 804 - -
Vra10g0315 1134 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 436 801 IPR027417 -
Vra10g0315 1134 MobiDBLite consensus disorder prediction 1105 1134 - -
Vra10g0315 1134 PANTHER HEAVY CHAIN, PUTATIVE-RELATED 21 1129 - -
Vra10g0315 1134 Gene3D Kinesin motor domain 377 765 IPR036961 -
Vra10g0315 1134 SUPERFAMILY Calponin-homology domain, CH-domain 48 202 IPR036872 -
Vra10g0315 1134 Pfam Kinesin motor domain 441 763 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra10g0315 1134 SMART ch_5 56 173 IPR001715 GO:0005515
Vra10g0315 1134 MobiDBLite consensus disorder prediction 836 854 - -
Vra10g0315 1134 MobiDBLite consensus disorder prediction 891 906 - -
Vra10g0315 1134 Pfam Calponin homology (CH) domain 56 175 IPR001715 GO:0005515
Vra10g0315 1134 ProSiteProfiles Calponin homology (CH) domain profile. 54 175 IPR001715 GO:0005515
Vra10g0315 1134 SMART kinesin_4 433 771 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra10g0315 1134 Gene3D - 46 174 IPR036872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0315 Vra-Chr10 7807338 7820552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0315 426 763 Calmodulin-binding Proteins AT5G65930 43.023 8.93e-75 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0315 K10406 - gmx:100793458 1960.27