Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0314 ATGCCTGCAAGCTTAAGGAATCTGTCACTTTCTCCCAAAATCTTCTCCTTCACCTTGCTTCTTTCATTAAACTCCCTTCTCTTTTTTCCATGTTCTTGTTACTCCCTTGATCACCAAGGTGAGACTCTTATAGCATGGAAAAACAGTTTGAACATCACTTCAGATGTGTTACCATCATGGAACCCTTCAGCCTCAAGCCCATGCAACTGGTTTGGGGTGTATTGCAACTCACAAGGAGAAGTTGTAGAGATAAACCTCAAGTCAGTCAACTTGCAAGGCTCATTGCCTTCAAATTTTCAACCTCTAAGGTCCTTGAAGTTTCTCATACTCTCATCAACCAACCTCACTGGAAGGATTCCAAAACAGATTGGAGACTATCTAGAGCTCACCTTTGTTGATCTCAGTGGCAATTCTCTCTTTGGTGAAATTCCAGAAGAAATTTGCAGCCTCAGAAAACTTACGAGTTTGTCTCTCCATACAAACTTCCTTGAAGGCAGCATTCCATCCAATATTGGCAATTTATCAAGCCTTGTGAACTTGACAATCTATGATAATCATCTCAGTGGTGAAATTCCAAAGAGCATTGGCTCCTTAAGCAAGCTCCAAGTTTTCAGAGCCGGTGGCAATAAGAACCTCAAGGGTGAGATCCCATGGGAGATTGGAAACTGCACCAACTTGGTCGTGCTAGGCCTTGCAGAAACCAGCATTTCTGGAAGTCTTCCTTCTTCAATCAAAATGCTGAAAAAAGTCAAAACCATAGCCATATACACAACTCTATTGTCAGGTTATATTCCAGAAGAGATTGGCAATTGCAGTGAGTTGCAGAACCTGTACTTACATCAGAACTCTATCTCTGGCTCAATACCAAGCCAAATTGGAGAACTCAACCAGCTTAAGAGTCTACTTTTGTGGCAAAACAATATAGTTGGTACCATCCCAGAAGAGCTTGGAAGCTGCACAGAGATCAAAGTCATAGACTTATCTGAAAACCTTCTCACTGGTAGCATACCAAGAAGTTTTGGCAACCTTTTAAATCTCCATGAGCTTCAGCTAAGTGTCAATCAGCTCTCTGGTATAATCCCTCCAGAGATTTCAAATTGCACTTCTCTGAATCAACTGGAACTTGACAACAATGCTCTCTCTGGTGAGATTCCTGATCTTATTGGAAACTTGAAAGGCTTGACTCTTTTCTTTGCATGGAAGAACAAGCTAACAGGAAACATTCCAGATAGTCTTTCTGAGTGCCAAGAACTTGAGGCACTTGATCTTTCTTACAACAACTTGATTGGTCCTGTACCCAGACAACTATTTGGGTTGAGGAACCTCACCAAACTTCTGCTTCTTTCCAATGAGTTATCAGGCTTTATACCACCTGATATAGGAAATTGCACAAGCCTCTACAGGCTGAGGTTGAATCACAACAGACTAGCAGGTAACATTCCTCCAGAGATTGGCAACTTGAAGAGTTTGAATTTTATGGACATGAGCAACAATCATCTCACTGGAGAGATTCCTCCAACGCTATCTGGATGCCAGAATCTTGAGTTTCTAGACCTTCATTCCAACAGTCTCACTGGTTCTGTTCCAGATTCTCTTCCCAAAAGCCTTGAGTTGATTGACTTGTCAGATAACAGGCTAAGTGGTGCGTTGAGTCACTCCATTGGTTCATTGGTTGAATTAACCAAACTCAACCTTGGAAAGAATCAGATAAGTGGAAGAATCCCTGCAGAGATCTTGTCCTGTACTAAGCTACAACTTCTGGACTTGGGAAGCAATAGCTTAGATGGAGAAATTCCCAATGAAGTTGGTTTAATTCCTTCATTGGAAATCTCACTCAATCTTAGCTTCAATCAGTTTTCTGGTAAAATTCCATCCCAGTTCTCTGGTCTTACCAAACTAGGAGTGCTTGATCTGTCTCACAACAAGCTCTCAGGGAATTTAGATGCCCTCTCTGACCTTGAGAATCTTGTCTCCTTAAACGTTTCCTTCAATGGCTTCTCTGGTGAGTTACCTAACACTCGATTCTTCCACAAACTCCCTCTTAGTGATCTTGCTGAAAATCATGGCCTCTACATTGCCGGAGGCGTTGTAACTCCTGCTGACAAAGTCCATGCTTCATCGACCATGAAGTTCATCATGTCCATTCTCTTAAGCACCAGTGCAGTTCTAGTGCTGCTTACAATATATGTCTTGGTCCGTACTCACATTGCCAGCAAGGTTCTCATGGAAAATGAAGCTTGGGAGATGACTTTGTATCAGAAGCTTGATTTCTCCATTGATGACATTGTCTTCAATTTGACATCAGCCAATGTGATTGGCACTGGAAGCTCTGGAGTGGTGTACAAGGTGACAATTCCAAATGGTGAAACACTGGCAGTTAAAAAGATGTGGTCATCAGAAGAGTCAGGAGCATTCAATTCTGAAATTCAAACATTGGGGTCAATTAGGCACAAGAACATCATCAGGCTTCTGGGTTGGGGATCAAACAAGAACCTGAAGCTGCTGTTTTATGACTACCTCCCTAATGGAAGCCTGAGTTCATTGCTTCATGGTTCAGGAAAGGGAAAAGCTGAATGGGAGACAAGATATGATGTTATATTAGGTGTGGCACATGCACTAGCATATTTGCACCATGATTGTTTGCCTGCCATTATCCATGGAGATGTCAAAGCCATGAATGTGTTATTAGGTCCAGGATATCAACCTTACCTTGCTGACTTTGGCCTGGCAAGAACTGCAACTGAAATTGCTGACAATACTAACTCCAAGCCACTTCAAAGACATTACCTTGCTGGTTCTTATGGATACATGGCTCCTGAGCATGCATCTCTTCAGCCTATCACTGAAAAGAGTGATGTGTACAGTTTTGGCATGGTTCTACTTGAGGTTCTCAGTGGAAGGCACCCATTAGACCCAACTCTGCCAGGGGGTGCACACTTGGTTCAGTGGGTTAGGAACCACTTGGCTAGCAAAGGAGACCCTTCTGACATTCTTGACACAAAGTTGAGAGGGAGGGCTGATCCAACCATGCATGAAATGCTACAAACTCTAGCAGTGTCATTTCTATGTGTAAGCACTAGATCTCAAGAACGTCCAACAATGAAGGATGTTGTTGCAATGCTGAAGGAAATTAGACCCCTTGAGACCTCAAGAACGGACTCTGATGTATTGAAGGGAGGTTTAACTTCACACAGTTCTCCACCACCTCCTAAGAATGTGGTTTCACATGGATCTTCTACATGCTCTTATAATTTCTCAGATAACTCAATCAGTTGA 3276 0.4249 MPASLRNLSLSPKIFSFTLLLSLNSLLFFPCSCYSLDHQGETLIAWKNSLNITSDVLPSWNPSASSPCNWFGVYCNSQGEVVEINLKSVNLQGSLPSNFQPLRSLKFLILSSTNLTGRIPKQIGDYLELTFVDLSGNSLFGEIPEEICSLRKLTSLSLHTNFLEGSIPSNIGNLSSLVNLTIYDNHLSGEIPKSIGSLSKLQVFRAGGNKNLKGEIPWEIGNCTNLVVLGLAETSISGSLPSSIKMLKKVKTIAIYTTLLSGYIPEEIGNCSELQNLYLHQNSISGSIPSQIGELNQLKSLLLWQNNIVGTIPEELGSCTEIKVIDLSENLLTGSIPRSFGNLLNLHELQLSVNQLSGIIPPEISNCTSLNQLELDNNALSGEIPDLIGNLKGLTLFFAWKNKLTGNIPDSLSECQELEALDLSYNNLIGPVPRQLFGLRNLTKLLLLSNELSGFIPPDIGNCTSLYRLRLNHNRLAGNIPPEIGNLKSLNFMDMSNNHLTGEIPPTLSGCQNLEFLDLHSNSLTGSVPDSLPKSLELIDLSDNRLSGALSHSIGSLVELTKLNLGKNQISGRIPAEILSCTKLQLLDLGSNSLDGEIPNEVGLIPSLEISLNLSFNQFSGKIPSQFSGLTKLGVLDLSHNKLSGNLDALSDLENLVSLNVSFNGFSGELPNTRFFHKLPLSDLAENHGLYIAGGVVTPADKVHASSTMKFIMSILLSTSAVLVLLTIYVLVRTHIASKVLMENEAWEMTLYQKLDFSIDDIVFNLTSANVIGTGSSGVVYKVTIPNGETLAVKKMWSSEESGAFNSEIQTLGSIRHKNIIRLLGWGSNKNLKLLFYDYLPNGSLSSLLHGSGKGKAEWETRYDVILGVAHALAYLHHDCLPAIIHGDVKAMNVLLGPGYQPYLADFGLARTATEIADNTNSKPLQRHYLAGSYGYMAPEHASLQPITEKSDVYSFGMVLLEVLSGRHPLDPTLPGGAHLVQWVRNHLASKGDPSDILDTKLRGRADPTMHEMLQTLAVSFLCVSTRSQERPTMKDVVAMLKEIRPLETSRTDSDVLKGGLTSHSSPPPPKNVVSHGSSTCSYNFSDNSIS* 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0314 1091 PRINTS Leucine-rich repeat signature 536 549 - -
Vra10g0314 1091 PRINTS Leucine-rich repeat signature 630 643 - -
Vra10g0314 1091 Gene3D Ribonuclease Inhibitor 148 229 IPR032675 -
Vra10g0314 1091 ProSiteProfiles Leucine-rich repeat profile. 632 654 IPR001611 GO:0005515
Vra10g0314 1091 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 1057 - -
Vra10g0314 1091 SUPERFAMILY RNI-like 288 609 - -
Vra10g0314 1091 SUPERFAMILY RNI-like 83 381 - -
Vra10g0314 1091 MobiDBLite consensus disorder prediction 1049 1079 - -
Vra10g0314 1091 Gene3D Transferase(Phosphotransferase) domain 1 840 1059 - -
Vra10g0314 1091 Pfam Protein kinase domain 769 1038 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0314 1091 SMART serkin_6 766 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0314 1091 Gene3D Ribonuclease Inhibitor 533 609 IPR032675 -
Vra10g0314 1091 Gene3D Ribonuclease Inhibitor 610 694 IPR032675 -
Vra10g0314 1091 Gene3D Ribonuclease Inhibitor 231 335 IPR032675 -
Vra10g0314 1091 Gene3D Ribonuclease Inhibitor 336 432 IPR032675 -
Vra10g0314 1091 Gene3D Ribonuclease Inhibitor 433 532 IPR032675 -
Vra10g0314 1091 SMART LRR_typ_2 343 367 IPR003591 -
Vra10g0314 1091 SMART LRR_typ_2 295 319 IPR003591 -
Vra10g0314 1091 SMART LRR_typ_2 630 653 IPR003591 -
Vra10g0314 1091 SMART LRR_typ_2 487 511 IPR003591 -
Vra10g0314 1091 SMART LRR_typ_2 150 174 IPR003591 -
Vra10g0314 1091 SMART LRR_typ_2 557 581 IPR003591 -
Vra10g0314 1091 SMART LRR_typ_2 439 463 IPR003591 -
Vra10g0314 1091 SMART LRR_typ_2 102 126 IPR003591 -
Vra10g0314 1091 ProSitePatterns Serine/Threonine protein kinases active-site signature. 884 896 IPR008271 GO:0004672|GO:0006468
Vra10g0314 1091 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 4 1057 - -
Vra10g0314 1091 Gene3D Phosphorylase Kinase; domain 1 732 839 - -
Vra10g0314 1091 SUPERFAMILY Protein kinase-like (PK-like) 764 1041 IPR011009 -
Vra10g0314 1091 Gene3D Ribonuclease Inhibitor 38 147 IPR032675 -
Vra10g0314 1091 SUPERFAMILY L domain-like 611 688 - -
Vra10g0314 1091 MobiDBLite consensus disorder prediction 1055 1079 - -
Vra10g0314 1091 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Vra10g0314 1091 ProSiteProfiles Protein kinase domain profile. 766 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0314 1091 ProSitePatterns Protein kinases ATP-binding region signature. 772 795 IPR017441 GO:0005524
Vra10g0314 1091 Pfam Leucine rich repeat 465 524 IPR001611 GO:0005515
Vra10g0314 1091 Pfam Leucine rich repeat 297 356 IPR001611 GO:0005515
Vra10g0314 1091 Pfam Leucine rich repeat 611 665 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0314 Vra-Chr10 7780266 7784490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0314 33 1090 Receptor kinase-like Gene Family AT5G56040 67.166 0.0 1426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra10g0314 Pkinase 2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0314 - - gmx:100802880 1969.51