Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0307 ATGGCTTCATTTCCTTCAAATTCTGCATCAGAACATAGCATGGCCAGTGCACAAAACAGCTCCTCACCTTCTTTCATGACTAGAGTGGCTATGAGAGTCTCTAGATCAAGATGGTTCACCTTCTTGAGAAGAGTATTCCATTACCAAAATGGACCAAGATCTGATCTTGGCTCCAACCCTTTCAATTCTAGCACTTGGATGATGCTGGAGTTGATTGCTTTACTGGTCCAGATAACAAGCACAACACTCACTTTGGCCATTTCAAAGAGTGAGAAGCCTATTTGGCCTATGAGGGTGTGGATAGCAGGTTATGATATTGGGTGTCTTCTTAATCTGCTGCTACTTTGTGGCCGCTACTATCAACTCCATGTGACTCAAGGAGGTGCTCTTAGCCTTTCTGATTTGGAGCAGCAGAGAAACAATGAAGAATCAAGTGTTCTGAGGGGATCACATTTGATGGACAAATGCAGAAGTTCTCTAGAGCTTTTCTTTGCCATATGGTTTGTGATGGGAAATGTTTGGGCCTTTGACTCACGTTTTGGGTCATTCCAACAAGCACCAAAACTGCAGGTGCTATGCATGATCCTACTAGCTTGGAATGCAATATGCTACTCTTTCCCTTTTCTGCTGTTTTTGCTCTTGTGCTGCTGTGTGCCACTGATGAGCACCCTCCTTGGATACAACATGAGCATGGGCTCCTCTGCAAAAGGGGCATCAGATGATCAAATCTCACAAATCCCAAGTTGGAGATACAAAGGTGCTCACACCAACTTGGACTTTGCCAATGACTCTCAAACCACTCAAAGATTGATCAATGATGACCCAGAATGTTGCATTTGCTTGGCCAAGTACAAAGACAGAGAAGAAGTTAGACAATTACCTTGTTCCCATTTGTTCCACCTAAAATGTGTGGATCAATGGCTAAGAATTATATCATGTTGCCCTCTTTGTAAACAAGGATTACAAAGATAG 972 0.43 MASFPSNSASEHSMASAQNSSSPSFMTRVAMRVSRSRWFTFLRRVFHYQNGPRSDLGSNPFNSSTWMMLELIALLVQITSTTLTLAISKSEKPIWPMRVWIAGYDIGCLLNLLLLCGRYYQLHVTQGGALSLSDLEQQRNNEESSVLRGSHLMDKCRSSLELFFAIWFVMGNVWAFDSRFGSFQQAPKLQVLCMILLAWNAICYSFPFLLFLLLCCCVPLMSTLLGYNMSMGSSAKGASDDQISQIPSWRYKGAHTNLDFANDSQTTQRLINDDPECCICLAKYKDREEVRQLPCSHLFHLKCVDQWLRIISCCPLCKQGLQR* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0307 323 CDD RING-H2_RNF111_like 275 318 - -
Vra10g0307 323 ProSiteProfiles Zinc finger RING-type profile. 277 318 IPR001841 -
Vra10g0307 323 SMART ring_2 277 317 IPR001841 -
Vra10g0307 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 322 IPR013083 -
Vra10g0307 323 SUPERFAMILY RING/U-box 267 321 - -
Vra10g0307 323 MobiDBLite consensus disorder prediction 1 21 - -
Vra10g0307 323 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 12 322 - -
Vra10g0307 323 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 12 322 - -
Vra10g0307 323 Pfam Ring finger domain 276 318 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0307 Vra-Chr10 7702087 7705049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0307 4 321 C3H Transcription Factor Family AT4G26580 66.667 3.98e-147 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0307 - - gmx:100818715 590.882