Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0305 ATGGAAACTGGGAGAGAGGATGAGATTGTGGACATGCCCATGTCACCCCCAGTTGGTTCAATTATTAACAATGACTTTTGTCACCACAAAGATTTCATGTCTCAGACATATCTGCAGAATAAGTACTCAGAGATTGATATAGACACTGAAGATTCCAACTTTGATCAAAATCGCCCCCTCCCCATATTTCTCAAGTTTGAAGATGTGGAGTATAAGGTGAGAAATAGCCAAGCAGGCTCAGGTAACATTGTGAAGTCAATGGTGTCAAAGATAACCACACACCTCACTGTGGAAGAAGATAGATACAAGAAAATTTTGAAGGGCATCACAGGAAGCATAGGCCCTGGTGAAATTCTTGCGTTGATGGGTCCTTCTGGCAGTGGGAAGACAACCTTGTTGAGAGTTATAGGAGGAAGACTAGTTGACAATGTAAAGGGAAAAGTAACTTACAATGATGTTCGTTTCAGTCCAGCTCTCAAGAGGAGGATTGGGTTTGTGACACAAGAAGATGTGCTTTTCCCACAGTTAACAGTTGAAGAAACTTTAGTCTTCTCTGCACTTTTGAGGCTACCAGGCAGTATGAGCAAGCAGCAAAAGTATGCAAAAGTAGATACCACCATCAAGGAGCTAGGCCTAGAAAGATGTCGCCACACAAAAATAGCTGGAGGATATCTCAAAGGAATATCAGGAGGAGAAAGGAAGAGAACCTGCATTGGCTCTGAAATTCTTGTTGATCCTTCACTATTGCTACTTGATGAGCCAACTTCTGGCCTTGATTCCTCCTCAGCAAACAAACTCCTTCTCACTCTTCAAGGACTTGCCAAGGCTGGAAGGACCATAATCACAACAATACACCAGCCATCGAGTAGAATCTTTCACATGTTTGACAAACTACTTCTGATATCAGAAGGCTATCCTGTTTACTATGGAAAAGCTAAGGAAACAATGGAGTACTTCTCATTTTTGAGATTCACCCCTCAAATACCGATGAATCCTGCAGAGTTCTTGCTTGACTTGGCAACTGGACAAGTGAATGACATAAGTGTTCCACCAGATATCTTTCAAGATCAAGAATCTTCTGACCCTTCAAAAGTTGTTATTGAATATTTACAGCTCAAATACAAATCTCTACTGGAGCCAAAAGAAAAAGAACAGAATCATAGAGTAGCAAGCACACCAGAACACCTTCAATTAGCAATTCAGGTTAAGATGGAGTGGACATCTAGTTGGTTGGACCAATTTATGATTCTCTCCAGGAGAACATATAAAGCAAGAAGAAAGGAATACTTTGATAAGCTAAGACTAGTTCAAGCACTTGGGATTGCACTTGTGTTGGGGCTCCTTTGGTGGAAATCTTCAATCAATACTGAAGCTGGACTCAGAGATCAGGTTGGTTTAGCATTCTACATCTGTATATTCTGGACATCTTCATGCATTTTTGCAGCAGTCTATGTCTTTCCATTTGAAGAGTACTACTTGGTCAAAGAAAATAAAGCTGACATGTACAGATTAAGCGTATACTATGCATGTAGCACTCTATGTGACATGGTGGCCACCGTTTTCTATCCTACTTTTTTCATGCTCATCTTGTACTTCATGGCTGGCTTTAACAGAGCTGTTGCTTCCTTCTTTTTGACACTATTAACTATTCTGTTGATAGCTATAACAAGTCAAGGGGCAGGTGAAATGTTTGGAGCTGCAATTATGAGTGTTAAAAGAGCAGGTACTGCTGCTACTTTGCTACTAATGTTATTCCTTCTCACAGGTGGCTACTATGTCCAGCACATACCAAAGTTCATGAGATGGTTGAAGTATATATCCTTCATGTACTATGGTTTTAGGCTTCTTCTAAAAGTGCAGTATTCTGGAGATCAGTTATATGATTGTGGAAGCAAGGGAGGGTGCAGGACCCTGCAGAGTTCTCCAACATTTGACAGTGTAAACTTGAAGGGTGGATTGAAAGAAGTGTGGATTCTGCTAGCTATGGCATTAATCTTTCGGTTGCTGGCTTACTTGTGTCTTCGTGTAAGAATTGTTGGTAGAAAAAACTAA 2052 0.4069 METGREDEIVDMPMSPPVGSIINNDFCHHKDFMSQTYLQNKYSEIDIDTEDSNFDQNRPLPIFLKFEDVEYKVRNSQAGSGNIVKSMVSKITTHLTVEEDRYKKILKGITGSIGPGEILALMGPSGSGKTTLLRVIGGRLVDNVKGKVTYNDVRFSPALKRRIGFVTQEDVLFPQLTVEETLVFSALLRLPGSMSKQQKYAKVDTTIKELGLERCRHTKIAGGYLKGISGGERKRTCIGSEILVDPSLLLLDEPTSGLDSSSANKLLLTLQGLAKAGRTIITTIHQPSSRIFHMFDKLLLISEGYPVYYGKAKETMEYFSFLRFTPQIPMNPAEFLLDLATGQVNDISVPPDIFQDQESSDPSKVVIEYLQLKYKSLLEPKEKEQNHRVASTPEHLQLAIQVKMEWTSSWLDQFMILSRRTYKARRKEYFDKLRLVQALGIALVLGLLWWKSSINTEAGLRDQVGLAFYICIFWTSSCIFAAVYVFPFEEYYLVKENKADMYRLSVYYACSTLCDMVATVFYPTFFMLILYFMAGFNRAVASFFLTLLTILLIAITSQGAGEMFGAAIMSVKRAGTAATLLLMLFLLTGGYYVQHIPKFMRWLKYISFMYYGFRLLLKVQYSGDQLYDCGSKGGCRTLQSSPTFDSVNLKGGLKEVWILLAMALIFRLLAYLCLRVRIVGRKN* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0305 683 Pfam ABC transporter 106 256 IPR003439 GO:0005524
Vra10g0305 683 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 4 676 - -
Vra10g0305 683 SMART AAA_5 115 306 IPR003593 -
Vra10g0305 683 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 64 328 IPR003439 GO:0005524
Vra10g0305 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 322 IPR027417 -
Vra10g0305 683 CDD ABCG_EPDR 102 310 - -
Vra10g0305 683 PANTHER ABC TRANSPORTER G FAMILY MEMBER 26 4 676 - -
Vra10g0305 683 Gene3D - 91 323 IPR027417 -
Vra10g0305 683 Pfam ABC-2 type transporter 413 621 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0305 Vra-Chr10 7664361 7668018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0305 104 289 Calmodulin-binding Proteins AT2G36910 30.144 7.28e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0305 K05681 - gmx:100806094 1169.45