Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0282 ATGGCCAAGCTTGCCCCTCTCGAAGAGCCTCTTTTGGATGGTGACTCTACTTCAATCAGCAATTCTGATCCTATTAAGACCAGAGGAAATGAAAATTTGACCCGATATTCAAATGCTGGATTTTTCAGTATTCTTTCTTTCTCATGGATCACTCCATTAATAACACTGGGAAATCACAAGACTTTAAACCATGAAGACCTCCCACTTCTTGCTACTGCTGACAGTGCCTATGGGGTTTATCCAACTTTTAGAAGAAANCTCGAGTCAGAGTGTGGTAGTGTTAAAAATGTNACCACACTTAAGCTGGTGAAGGTATTATTCTTGTCGACATGGCAAGGGATCTTTTTGTCAGGTTTATTTGCGTTCCTCTATGCCTGTGCTTCTTATGTTGGACCCTTTCTTATTGACATCCTTGTTGGATACCTCAATGGAGAATACATGTTTAAAAATGAAGGCTATGTTTTGGCTGCGACTTTTGTTGCTGCAATGCTTGTGGAGTGTCTTTCACTGAGGCATTGGATGTTTAGGTTTCAGCAGGTTGGGGTTAGAATGCAATCCATGTTGGTGGAAATGATCTATGCTAAAGGTTTGACTCTTTCGTGTCAATCAAAGGAGGTTCGTAGTACTGGGGAAATCATCAACTTAATGACTGTCGATGCTGAAAGAATTGGCGAATTCTGTTGGTACATGCATGATCCATGGATNTGTGTTTTGCAGCTTGCTTTGGCCCTGTTAATTCTNTATAGAAGTGTGGGTGTTGCTTCGTTAGCTGCTCTTGCTGCCACTGTAATTGTGATGTTGCTAAACCATCCTGTGGCATCATTGCAAGAAAAGTTCCAAGGCAAGATAATGGAATTCAAAGATAAAAGAATGAAGGCTACGTCTGAGATACTTAAGAATATGAGGATTCTAAAACTGCAAGCATGGGAGATGAAGTTCTTATCAAAGATTATTCAGATTAGAAAGAGTGAAGAGACATGGCTAAGGAAATTTCTTGCTGGCATAGCAACTATTCGATTCTTCTTCCACAACGCCCCAACTTTTATTGCAGTTGTTACGTTTGGTTCTTGTGCTCTTGTGGGGATACCACTTGAATCAGGGAAGGTGTTGTCTGCACTTGCAATATTCAGAATTCTTCAAATGCCCATCTACAGTCTTCCTGAGACAATTTCTATGATTGCACAAACGAAAGTTTCTCTGGATAGGATTGCATCATTTCTTAGACTAGACGAGTTGCGGACTGATATAGTACAGAAGCTTCCGTGGGGTAGTTCTGACAAGGCAATTGAATTAGTGGATGGAAACTTCTCATGGGATTTATGTTCTCCTAATCCAACATTGAAAAACATAAATCTCAATGTTTATCATGGTATGAGAGTAGCTGTATGTGGTACTGTTGGATCAGGCAAGTCTAGTTTACTTTCTTGTATTATAGGGGAAGTACCAAAGATATCTGGGACATTGAAAATATGTGGAACAAAGGCTTATGTTTCTCAATCACCATGGATACAGAGTGGAAAGATAGAAGACAACATATTATTTGGTAAAGAGATGAACAGTGAAAAGTATGAGAAGGTGCTGGAAGCATGTTCCTTGACAAAAGACCTTGAGGTTCTACCATTCGGTGATCACACCATTATTGGGGAGAAAGGAATCAATTTGAGTGGTGGTCAGAAGCAAAGAGTGCAAATAGCTCGTGCTCTATATCAAGATGCTGATATATATCTTTTTGATGATCCCTTCAGTGCCGTTGATGCTCATACAGGATCCCATCTCTTTAAGGAATGCTTGCTTGGCCTTTTAAAATCAAAAACTGTGATATACGTAACACATCAAGTAGAGTTCTTACCTGATGCTGATCTAATATTGGTCATGAAAGAAGGAAGGATAACTCAATCAGGAAAATACAACGACATTCTCCACACAGGCACAGATTTTATGGAACTTGTAGGTGCACACAGAGCAGCTTTGTCTTCAATTAAGTCTTTAGAGAGAAGATCAACATTTAAAACATCAAGTATCACCGATGAGAAAACAAATTCGTTAAATGATTTTGAAGTTGAGCAAAATGTGGAAGACATACATGTTGAAAATGATAATAAGCCAAACGACACAGTTGAGCCCAAAGGACAACTTGTTCAAGAAGAAGAACGAGAAAAGGGCAGTGTTGGGTTTAAAGTGTACTGGAAATACATCACAACAGCTTATGGAGGAGCTCTTGTGCCCTTCATATTACTTTCGCAGATACTCACTGTGGGTTTTCAGATTGCAAGCAATTATTGGATGACTGTAGCAACTCCTGTTTCGGCAACAGCAGAAACTAATATTGGAAGCTTTACACTCATGGTTGTCTATGTCGCTTTGGCAATTGGAAGTTCCATTTTCACCTTTGCCACGTCATTTCTTGCTGTGATAGCTGGATACAAGACAGCCACTGTACTCTTCGATAAAATGCATTCGTGTATTTTTCGAGCACCAATATCATTTTTTGATTCCACCCCAAGTGGTCAAATCCTCAACAGAGCTTCAATAGACCAAAGCTCACTAGATATGTACATTGCAAACATATTATGGGCAATTACCCTCAATCTGGTACAACTATTGGGAAATGTTATTGTTATGTCTCAAGCTGCATGGCAGGTGTTCATAGTATTGATTCCTGTCATGGCAGCTAGCATATGGTACCAGCGGTACTATTCTGCATCTGCAAGAGAATTGGCACGATTGGTTGGTACATGTCAAGCTCCGGTTATACAACATTTTTCTGAAACAATTTCTGGATCAACAACCATAAGAAGTTTTGAACAAGAATCAAGATTTAATGACATAAACATGAAGTTGATAGACAGATATTCCCAACCCAAACTATACAGTGCTACTGCAATTGAATGGCTGAATTTCCGATTGGATATTTTATCCACTGTCATATTTGCCTTCTGTTTGGTATTCTTGGTATCTTTCCCAAATTCAATGACTGCTCCTGGCATTGCGGGATTGGCTGTGACATATGGACTTAATCTAAATATTCTGCAAACTAGGGTAATCTGGTTTCTTTGTGACTTGGAGAAAAAGATTATATCTGTTGAGAGAATACTCCAGTACACATCCCTCCCTAGTGAAGCTCCTCTTGTGATTAAAGACAACCAACCGGATTGTTCTTGGCCATCATTCGGAGAGGTTCATATCTGGAATTTGCAGGTTCGATATGCTCCTCACTTGCCTATTGTTTTACGAGGTCTTACTTGCACTTTTACTGCTGGATCAAAAACTGGTATTGTGGGAAGAACAGGAAGTGGAAAATCAACTCTTGTGCAAACACTTCTCCGACTTATTGAACCTGTGGATGGAAAAATATTAATAGATAACATTAACATATCTTTGATTGGAATTCATGATTTGCGGTCTAGACTCAGCATTATTCCTCAAGATCCAACCATGTTTGAAGGGACTATAAGAACCAACCTGGATCCACTAGAAGAGTACACAGATGAACAGATTTGGGAGGCTCTAGATATGTGCCAACTTGGAGATGATGTAAGGAAAAAAGAAGGGAAGCTGGACTCCATAGTGACTGAGAATGGAGAAAATTGGAGTATGGGTCAAAGGCAGTTGGTCTGCCTAGGCCGTGTTCTACTGAAGAAAAGCAAGATCTTGGTGCTTGATGAAGCTACTGCATCTGTTGACACAGCCACAGATAATATTATTCAGCAAACAGTTAAGCAACATTTTTCGGAACGCACAGTTATTACCATTGCTCATAGGATAACTTCTATCATCGACAGTGACATGGTTCTATACTTAAATCAAGGGTTGATAGAAGAATATGATTCACCTAAGAAACTTCTTAAGAACAAATCTTCATCTCTAGCTCAACTAGTTGAAGAGTACACAAAGAGGTCAAACTCTGGTTTTGGAAATTAG 3921 0.3943 MAKLAPLEEPLLDGDSTSISNSDPIKTRGNENLTRYSNAGFFSILSFSWITPLITLGNHKTLNHEDLPLLATADSAYGVYPTFRRXLESECGSVKNVTTLKLVKVLFLSTWQGIFLSGLFAFLYACASYVGPFLIDILVGYLNGEYMFKNEGYVLAATFVAAMLVECLSLRHWMFRFQQVGVRMQSMLVEMIYAKGLTLSCQSKEVRSTGEIINLMTVDAERIGEFCWYMHDPWXCVLQLALALLILYRSVGVASLAALAATVIVMLLNHPVASLQEKFQGKIMEFKDKRMKATSEILKNMRILKLQAWEMKFLSKIIQIRKSEETWLRKFLAGIATIRFFFHNAPTFIAVVTFGSCALVGIPLESGKVLSALAIFRILQMPIYSLPETISMIAQTKVSLDRIASFLRLDELRTDIVQKLPWGSSDKAIELVDGNFSWDLCSPNPTLKNINLNVYHGMRVAVCGTVGSGKSSLLSCIIGEVPKISGTLKICGTKAYVSQSPWIQSGKIEDNILFGKEMNSEKYEKVLEACSLTKDLEVLPFGDHTIIGEKGINLSGGQKQRVQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLKSKTVIYVTHQVEFLPDADLILVMKEGRITQSGKYNDILHTGTDFMELVGAHRAALSSIKSLERRSTFKTSSITDEKTNSLNDFEVEQNVEDIHVENDNKPNDTVEPKGQLVQEEEREKGSVGFKVYWKYITTAYGGALVPFILLSQILTVGFQIASNYWMTVATPVSATAETNIGSFTLMVVYVALAIGSSIFTFATSFLAVIAGYKTATVLFDKMHSCIFRAPISFFDSTPSGQILNRASIDQSSLDMYIANILWAITLNLVQLLGNVIVMSQAAWQVFIVLIPVMAASIWYQRYYSASARELARLVGTCQAPVIQHFSETISGSTTIRSFEQESRFNDINMKLIDRYSQPKLYSATAIEWLNFRLDILSTVIFAFCLVFLVSFPNSMTAPGIAGLAVTYGLNLNILQTRVIWFLCDLEKKIISVERILQYTSLPSEAPLVIKDNQPDCSWPSFGEVHIWNLQVRYAPHLPIVLRGLTCTFTAGSKTGIVGRTGSGKSTLVQTLLRLIEPVDGKILIDNINISLIGIHDLRSRLSIIPQDPTMFEGTIRTNLDPLEEYTDEQIWEALDMCQLGDDVRKKEGKLDSIVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKQHFSERTVITIAHRITSIIDSDMVLYLNQGLIEEYDSPKKLLKNKSSSLAQLVEEYTKRSNSGFGN* 1307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0282 1306 SMART AAA_5 1086 1271 IPR003593 -
Vra10g0282 1306 SMART AAA_5 456 629 IPR003593 -
Vra10g0282 1306 CDD ABCC_MRP_domain1 429 629 - -
Vra10g0282 1306 CDD ABC_6TM_ABCC_D1 116 403 IPR044746 GO:0140359
Vra10g0282 1306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1052 1286 IPR027417 -
Vra10g0282 1306 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 5 1306 - -
Vra10g0282 1306 Gene3D ABC transporter type 1, transmembrane domain 704 1041 IPR036640 GO:0005524|GO:0016021
Vra10g0282 1306 Gene3D ABC transporter type 1, transmembrane domain 91 411 IPR036640 GO:0005524|GO:0016021
Vra10g0282 1306 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1060 1294 IPR003439 GO:0005524
Vra10g0282 1306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 426 651 IPR027417 -
Vra10g0282 1306 Gene3D - 1043 1296 IPR027417 -
Vra10g0282 1306 Gene3D - 413 675 IPR027417 -
Vra10g0282 1306 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 115 395 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra10g0282 1306 SUPERFAMILY ABC transporter transmembrane region 741 1042 IPR036640 GO:0005524|GO:0016021
Vra10g0282 1306 ProSitePatterns ABC transporters family signature. 554 568 IPR017871 GO:0005524
Vra10g0282 1306 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 743 1023 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra10g0282 1306 SUPERFAMILY ABC transporter transmembrane region 111 408 IPR036640 GO:0005524|GO:0016021
Vra10g0282 1306 CDD ABCC_MRP_domain2 1058 1278 - -
Vra10g0282 1306 Pfam ABC transporter 1078 1225 IPR003439 GO:0005524
Vra10g0282 1306 Pfam ABC transporter 447 581 IPR003439 GO:0005524
Vra10g0282 1306 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 5 1306 - -
Vra10g0282 1306 CDD ABC_6TM_ABCC_D2 741 1035 IPR044726 GO:0140359
Vra10g0282 1306 Pfam ABC transporter transmembrane region 114 382 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra10g0282 1306 Pfam ABC transporter transmembrane region 743 986 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra10g0282 1306 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 429 652 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0282 Vra-Chr10 7305722 7311596 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0282 429 673 Calmodulin-binding Proteins AT2G36910 29.924 4.42e-25 111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0151 6 1078105 1084162 Vra10g0282 10 7305722 7311596 PCT