Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0279 ATGATGTTGTTGGTCTCAACACTCGGTTCTCTTGCTCTTAGACATTTTGGCACTAGTCTTGTGACATATTTAGTGAAGCCGGTTTTCTTGCATGGCTTCTCTGGTTTCCTTCATCTACTGTTATTGGTGGTGCTTTTAGTGTCACTGGTGTGGAGGAAAGTCGCAGTTGGAACCAGAGAAAGTTCCACAATGAACATTACGTTTCCAAAGGCTCCACTTTGTTCCCTTCTTGTTTCGGCTATCAATTTTCTACTCTTTTTGTTTGATTACTTTTGTTGGTATAAAAATGGTTGGTCAGAAGAAAAGCTTGCGACCCTTTTGGATTTTCTGTTCAAAACAGTTGCTTGGGGTGTTGCTGGTGTTTGTTTGCACATGGAACTCTTCATTTCAAGGGAAAGAAGATTACCATTCTTCTTCAGAGCTTGGTGCGTCCTTTACCTCGTTGTTTCCGGGTATTTCTTTATAGTGAACTTTGCTCTCTATAAAGAAAAGCATTCTGCTTTGCCCCTTCAGAGCTTAGTTTCTGATGCGTTCTCTGTTTGTGTGTGTTTGTTCTTCTTTTACTTGGAGTTGTTTGTAAAAAGTGAGGGTGGTGTAGGAGATAGTACTTTACAAGAATCTCTTTTGGATACTGACTCAAGAGATGATGTGTTTGAGACAAAAGAGACCAAGGGGAGTGACACTGTTACACCTTACTCTAATGCTGGAATATTTAGCCTTCTTACCTTCTCTTGGATTGGTCCTCTAATTACTGTTGGAAGGAAGAAGCCTTTGGACCTTGAGGATGTCCCCCAACTTGACAAAAGAGACAGTTTAATTGGAGCTTTTCCAACTTTTAGCGATAGGCTTGAGGCACAATGTGGAGCTATTACCTCAGTGGACACACTTATGTTAGTGAAGTCATTGGTATTCTCAAGCTGGAAAGAAATCATTTACACAGCCATCCTTGCATTGCTAAACACATTGGCTTCTTTTGTTGGTCCCTATCTTATTGATGGTTTTGTTCAATTCCTTAACGGACAACGGAAATTTGAGCATGAGGGCCTTATATTGGTGACTGCATTTTTTGTGGCAAAGCTTTTGGAGTGCCTCACAAGGAGGCACTGGTTATTTAGGTTGCAACAGGTTGGAATACGAATGCGAGCACTGCTTGTGACAATGATATATAATAAAATTTTGAATCTTTCATGTCAATCCAAGCACGGCCACACTACTGGGGAAATAATCAACTTCATGACCGTTGATGCAGAAAAAGTTGGTGAGTTCAGTTGGCATCTACATGATCTGTGGTTAGTAGTTCTACAGGTTATAGTAGCCTTGTTGATTTTGTATAGAAATCTTGGGCTTGCTTCAATTTCTGGCCTTGTTGCAATTCTCATAGTAATGTGGGCAAACATTCCCTTGGGTTCAATCCAAGAGAAGTTTCATAACAAGTTGATGGAGTCAAAAGATGCACGAATGAAAACAACTTCTGAGATTTTGAGAAACATGCGGATTCTCAAACTACAAGGATGGGAAATGAAGTTTTTGTCAAACATAACCCAACTCAGAAAGATTGAGCAGGACTGGTTAAAAAAAGTTATATACTCGTTAGTCATGATCATATTTGTGTTTTGGTGTGCCCCAGCATTTGTGTCAGTGGTTACTTTTGGTACTTGTATACTTGTAGGAATCCCCCTTGAGTCAGGGAAGATACTGTCTACACTTGCCACATTCCAGATTCTCCAAGAACCCATTTATAATCTTCCAGAGACAATATCAATGATGGCACAGACTAAGGTTTCTCTTGACAGGATTGCATCTTTCCTTCGTCTGGATGAGATTCTATTTGATGTTGTGGAGAAGCTTCCACAAGGTAGTTCTAATGTAGCTGTTGAAGTAGTTGATGGGAATTTCTCTTGGGACTCATTTTCCCCTGGTATAACATTGCAAAACATAAATTTCAGAGTTTTTCATGGCATGAAGGTTGCAGTTTGTGGTAGTGTTGGATCAGGCAAGTCTACTTTTCTTTCTTGTATATTAGGAGAAGTACCCAAGAAATCAGGGATTTTGAAGGTGTGTGGAACAAAGGCCTATGTAGCTCAGTCACCGTGGATACAAAGTAGCACGATAGAGGATAATATATTGTTTGGTAAGGACATGGAAAGGCAAAGGTATGAGAAGGTTCTTGAAGCTTGTTGCCTAAAGAAGGATCTAGATGTTTTGCCATTTGGAGATCAGACTATAATAGGGGAGAGGGGGATAAATTTGAGTGGTGGACAGAAACAGAGAATACAAATTGCTCGTGCTCTGTATCATGATGCTGATATATATCTATTGGATGATGTGTTTAGTGCTGTGGATGCTCACACAGGATCTCATCTTTTTCAGGAATGCTTACTCAACTATTTAAGTTCAAAGACAGTGGTTTATGTCACTCATCAAGTAGAGTTCTTACCTGCCGCTGACCTTATTTTGGTCATGAAAGATGGAAAGATTATTCAAAGTGGAAAATACGATTATCTGCTCAAGTCAGGCACTGATTTTATGGAACTTGTTGGTGCTCATAAAGAAGCTTTGTCTGCACTTGATTCAATAGATGGAGGGAAAGCGTCTGCTATAACAAGTACATCAAAAGAGGATGTAAGTTTCGTTGTTTCTCAAGGTATTGAAGAAAAGGAAGTAAGGAAAAATGAGAAAAATGGTGGAAAAGATAACAAACATGACCCAAAAGGCCAACTTATCCAAGAAGAAGAAAGAGAGAAAGGTAAAGTAGGGTTTGCAGTTTATTGGAAATATATAACAACAACATATGGAGGAGCACTTGTACCACTCATATTGTGTGCTGAAATTTTGTTTCAACTTCTTCAAATTGGAAGCAACTATTGGATGGCTTGGGCAACTCCTATCACATCTGATGCTGAGCCAACTGTTGGAGGAAGTGCCCTTATATTTGTATATGTAGCTTTGGCCATAGGAAGTTCTATCTGTGTCCTTGCTAGAGCAACACTTGTTGCCACAACTGGTTATAAGACAGCTACTTCACTCTTCAACAACATGCATCTCAGCATTTTCCGTGCTCCAATGTCATTTTTCGATGCCACTCCAAGTGGGAGAATCCTTAATAGGGCTTCTACTGATCAAAGGGCAGTGGATATAGACATTCCTTTTCAAACTGGATCGTTTGCTGCCTCTATAGTCCATCTTCTCGGAATTGTAGCAGTAATGTCTCAAGTTGCATGGCAGGTTTTCATTGTCTTTATTCCCATCACAGCAATCAACATTTGGTATCAGCAATATTATCTACCAGCAGCCCGGGAACTATCACGTTTAGTTGGGGTATGCAACGCTCCTGTCATTCAGCACTTTGCTGAAACAATATCAGGTGCATCAACCATCAGGAGCTTTGATCAGGTGCCAAGATTTCAGCAAACAAATATGAAACTGATGGATGGATATTCTCGCCCCAAGTTCAACAATGCTGCTACTATGGAATGGTTGTGCTTCCGATTAGATATCTTGTCTTCCATCACATTTGCCTTTTGCTTGATATTCTTGATATCTATTCCACATGGGTTCATAGATTCAGGTATTGCTGGTTTAGCTGTAACCTATGGCCTTAATCTGAACATTATACAATCATGGATGATATGGGAACTTTGCAGCTTGGAGAACAAAATTATATCAGTGGAAAGAATTCTTCAGTTTTCTTCAATTCCTAGTGAGCCTCCTCTTGTTGTAGAGGAAAACCGGCCACATGATTCTTGGCCATCATGTGGCAGGATTGATATTCACAACCTGCAGGTACGTTACGCTCCACATATGCCATTTGTGTTGCATGGCTTTACATGCACATTCCATGGAGGACTTAAAACTGGAATTGTTGGGAGAACAGGAAGTGGCAAATCAACTCTCATACAAACACTATTCCGAATTGTTGAGCCTACTGTTGGGAGAATTATGATTGATGGCATCAACATCTCATCCATTGGACTTCATGATTTGAGGTCTAGACTGAGCATTATCCCTCAGGATCCAACCATGTTTGAAGGTACTGTGAGAAGTAATATGGACCCACTTGAAGAGTACACAGATGAACAAATTTGGGAGGCCCTTGATAAGTGCCAACTTGGAGATGAAGTCAGAAGGAAAGAAGGAAAACTAGACTATGCAGTTTGTGAGGATGGAGAAAATTGGAGTATGGGTCAGAGGCAATTGGTATGTCTTGGTAGAGTACTGCTTAAGAAGAGTAAGGTCTTGGTGCTAGATGAAGCTACTGCATCAGTTGACACAGCTACAGATAATTTGATTCAGCAAACTCTTAGGCAATACTTTTCTGATTTCACAGTCATTACAATTGCCCATAGAATAACTTCTGTCATTGATAGTGATATGATTCTACTACTTAATCAAGGACTAATTGAGGAGTATGATTCTCCAGCAAGGTTGCTAGAGGACAAGTTTTCATCTTTTGCTCAACTTGTAGCAGAGTACACCACAAGGTCCAATTCCAGTTTTGACCAACTAAAATAA 4512 0.4003 MMLLVSTLGSLALRHFGTSLVTYLVKPVFLHGFSGFLHLLLLVVLLVSLVWRKVAVGTRESSTMNITFPKAPLCSLLVSAINFLLFLFDYFCWYKNGWSEEKLATLLDFLFKTVAWGVAGVCLHMELFISRERRLPFFFRAWCVLYLVVSGYFFIVNFALYKEKHSALPLQSLVSDAFSVCVCLFFFYLELFVKSEGGVGDSTLQESLLDTDSRDDVFETKETKGSDTVTPYSNAGIFSLLTFSWIGPLITVGRKKPLDLEDVPQLDKRDSLIGAFPTFSDRLEAQCGAITSVDTLMLVKSLVFSSWKEIIYTAILALLNTLASFVGPYLIDGFVQFLNGQRKFEHEGLILVTAFFVAKLLECLTRRHWLFRLQQVGIRMRALLVTMIYNKILNLSCQSKHGHTTGEIINFMTVDAEKVGEFSWHLHDLWLVVLQVIVALLILYRNLGLASISGLVAILIVMWANIPLGSIQEKFHNKLMESKDARMKTTSEILRNMRILKLQGWEMKFLSNITQLRKIEQDWLKKVIYSLVMIIFVFWCAPAFVSVVTFGTCILVGIPLESGKILSTLATFQILQEPIYNLPETISMMAQTKVSLDRIASFLRLDEILFDVVEKLPQGSSNVAVEVVDGNFSWDSFSPGITLQNINFRVFHGMKVAVCGSVGSGKSTFLSCILGEVPKKSGILKVCGTKAYVAQSPWIQSSTIEDNILFGKDMERQRYEKVLEACCLKKDLDVLPFGDQTIIGERGINLSGGQKQRIQIARALYHDADIYLLDDVFSAVDAHTGSHLFQECLLNYLSSKTVVYVTHQVEFLPAADLILVMKDGKIIQSGKYDYLLKSGTDFMELVGAHKEALSALDSIDGGKASAITSTSKEDVSFVVSQGIEEKEVRKNEKNGGKDNKHDPKGQLIQEEEREKGKVGFAVYWKYITTTYGGALVPLILCAEILFQLLQIGSNYWMAWATPITSDAEPTVGGSALIFVYVALAIGSSICVLARATLVATTGYKTATSLFNNMHLSIFRAPMSFFDATPSGRILNRASTDQRAVDIDIPFQTGSFAASIVHLLGIVAVMSQVAWQVFIVFIPITAINIWYQQYYLPAARELSRLVGVCNAPVIQHFAETISGASTIRSFDQVPRFQQTNMKLMDGYSRPKFNNAATMEWLCFRLDILSSITFAFCLIFLISIPHGFIDSGIAGLAVTYGLNLNIIQSWMIWELCSLENKIISVERILQFSSIPSEPPLVVEENRPHDSWPSCGRIDIHNLQVRYAPHMPFVLHGFTCTFHGGLKTGIVGRTGSGKSTLIQTLFRIVEPTVGRIMIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRSNMDPLEEYTDEQIWEALDKCQLGDEVRRKEGKLDYAVCEDGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQYFSDFTVITIAHRITSVIDSDMILLLNQGLIEEYDSPARLLEDKFSSFAQLVAEYTTRSNSSFDQLK* 1504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0279 1503 ProSitePatterns ABC transporters family signature. 750 764 IPR017871 GO:0005524
Vra10g0279 1503 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 625 848 IPR003439 GO:0005524
Vra10g0279 1503 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1257 1489 IPR003439 GO:0005524
Vra10g0279 1503 CDD ABCC_MRP_domain2 1253 1473 - -
Vra10g0279 1503 CDD ABC_6TM_ABCC_D1 312 599 IPR044746 GO:0140359
Vra10g0279 1503 Gene3D - 611 859 IPR027417 -
Vra10g0279 1503 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 96 1503 - -
Vra10g0279 1503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1246 1480 IPR027417 -
Vra10g0279 1503 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 96 1503 - -
Vra10g0279 1503 SUPERFAMILY ABC transporter transmembrane region 936 1237 IPR036640 GO:0005524|GO:0016021
Vra10g0279 1503 Pfam ABC transporter transmembrane region 311 578 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra10g0279 1503 Pfam ABC transporter transmembrane region 939 1180 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra10g0279 1503 SMART AAA_5 1281 1466 IPR003593 -
Vra10g0279 1503 SMART AAA_5 652 825 IPR003593 -
Vra10g0279 1503 SUPERFAMILY ABC transporter transmembrane region 299 599 IPR036640 GO:0005524|GO:0016021
Vra10g0279 1503 CDD ABCC_MRP_domain1 625 825 - -
Vra10g0279 1503 Pfam ABC transporter 643 776 IPR003439 GO:0005524
Vra10g0279 1503 Pfam ABC transporter 1273 1420 IPR003439 GO:0005524
Vra10g0279 1503 Gene3D - 1238 1491 IPR027417 -
Vra10g0279 1503 MobiDBLite consensus disorder prediction 887 909 - -
Vra10g0279 1503 CDD ABC_6TM_ABCC_D2 936 1230 IPR044726 GO:0140359
Vra10g0279 1503 Gene3D ABC transporter type 1, transmembrane domain 291 607 IPR036640 GO:0005524|GO:0016021
Vra10g0279 1503 Gene3D ABC transporter type 1, transmembrane domain 898 1236 IPR036640 GO:0005524|GO:0016021
Vra10g0279 1503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 622 847 IPR027417 -
Vra10g0279 1503 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 314 591 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra10g0279 1503 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 938 1218 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0279 Vra-Chr10 7282235 7288155 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0279 625 876 Calmodulin-binding Proteins AT2G36910 31.985 1.55e-27 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0279 - K05666 gmx:100775358 2457.17