Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0278 ATGGCCAAGCTTGCCCCTCTTGAAGACCCTCTTTTGGGTGGTGACTCTACTTCAATCAACAATTCTGATCCTATTAAGACAAGAGGAAATGAAAATTTGACCCGATATTCAAATGCTGGACTTTTCAGTATTCTTTCTTTCTCATGGATCACTCCATTAATAACACTGGGAAATCACAAGACTTTAAACCATGAAGACCTCCCACTTCTTGCTACTGCTGACAGTGCCTATGGGGTTTATCCAACTTTTAGAAGAAANCTCGAGTCAGAGTGTGGTAGTGTTAAAAATGTNACCACACTTAAGCTGGTGAAGGTATTATTCTTGTCGACATGGCAAGGGATCTTTTTGTCAGGTTTATTTGCGTTCCTCTATGCCTGTGCTTCTTATGTTGGACCCTTTCTTATTGACATCCTTGTTGGATACCTCAATGGAGAATACATGTTTAAAAATGAAGGCTATGTTTTGGCTGCGACTTTTGTTGCTGCAATGCTTGTGGAGTGTCTTTCACTGAGGCATTGGATGTTTAGGTTTCAGCAGGTTGGGGTTAGAATGCAATCCATGTTGGTGGAAATGATCTATGCTAAAGGTTTGACTCTTTCGTGTCAATCAAAGGAGGTTCGTAGTACTGGGGAAATCATCAACTTAATGACTGTCGATGCTGAAAGAATTGGCGAATTCTGTTGGTACATGCATGATCCATGGATNTGTGTTTTGCAGCTTGCTTTGGCCCTGTTAATTCTNTATAGAAGTGTGGGTGTTGCTTCGTTAGCTGCTCTTGCTGCCACTGTAATTGTGATGTTGCTAAACCATCCTGTGGCATCATTGCAAGAAAAGTTCCAAGGCAAGATAATGGAATTCAAAGATAAAAGAATGAAGGCTACGTCTGAGATACTTAAGAATATGAGGATTCTAAAACTGCAAGCATGGGAGATGAAGTTCTTATCAAAGATTATTCAGATTAGAAAGAGTGAAGAGACATGGCTAAGGAAATTTCTTGCTGGCACAGCAACTATTCGATTCTTCTTCCACAACGCCCCAACTTTTATTGCAGTTGTTACGTTTGGTGCTTGTGTTCTTGTGGGGATACCACTTGAATCAGGGAAGGTCTTGTCTGCACTTGCAACATTCAGAATTCTTCAAATGCCCATCTACAGTCTTCCTGACACAATTTCTACGATTGCACAAACTAAAGTTTCTCTGGATAGGATTGCATCATTTCTTAGACTAGACGAGTTGCAGACTGATATAGTACAGAAGCTTCCGTGGGGTAGTTCTGACAAGGCAATTGAATTAGTGGATGGAAACTTCTCATGGGATTTATGTTCTCCTAATCCAACATTGAAAAACATAAATCTCAATGTTTATCATGGTATGAGAGTAGCTGTATGTGGTACTGTTGGATCAGGCAAGTCTAGTTTACTTTCTTGTATTATAGGGGAAGTACCAAAGATATCTGGGACATTGAAAATATGTGGAACAAAGGCTTATGTTTCTCAATCGCCATGGATACAGAGTGGAAAGATAGAAGACAACATATTATTTGGTAAAGAGATGGACAATGAAAAGTATGAGAAGGTGCTAGAAGCATGTTCCTTGACAAAAGACCTTGAGGTTCTACCATTCGGTGATCACACAATTATTGGGGAGAAAGGAATCAATTTGAGTGGTGGTCAGAAGCAAAGAGTGCAAATAGCTCGTGCTCTATATCAAGATGCTGATATATATCTTTTTGATGATCCCTTCAGTGCCGTTGATGCTCATACAGGATCCCATCTCTTTAAGGAATGCTTGCTTGGCCATTTAAAATCAAAAACTGTGATATACGTAACACATCAAGTAGAGTTCTTACCTGATGCTGATCTGATATTGGTCATGAGAGAAGGAAGGATAACTCAATCAGGAAAATACAAAGACATTCTAAAGACAGGCACAGATTTTATGGAACTTGTAGGGGCACACAGAGCAGCTTTGTCTTCAATTAAGTCTTTAGAGAGAAGACCAACATTTAAAACATCAAGTACCACCGATGAGAAAACAAATTTGTTAAGTGATTTTGAATTTGAGCAAAATGTAGAAGACATACATGTTGAAAATGATAAGCCAAACGGCACCGTTGAGCCCAAAGGACAACTTGTCCAAGAAGAAGAACGAGAAAAGGGCAGAGTTGGGTTTAAAGTGTACTGGAAATACATCACAACAGCTTATGGAGGAGCTCTTGTGCCCTTCATATTACTTTCGCAGATACTCACTGTGGGTTTTCAGATTGCAAGCAATTATTGGATGACTGTAGCAACTCCTGTTTCAGCAACAGCAGAAACTGATATTGGAAGCTTTACACTTATGGTTGTCTATGTTGCTTTTGAATTTGGAAGTTCCATTTTCACATTTGCCAGATCATTTCTTGCTGTGATAGCTGGATACAAGACAGCCACTGTACTCTTCGATAAAATGCATTTGTGTATTTTTCGAGCACCAATATCATTTTTTGATTCCACCCCAAGTGGTCGAATCCTCAACAGAGCTTCAATAGACCAAAGCTCTCTAGATATGTACATTGCAAACATATTATGGGCAATTACCCTCAATCTGATTCAACTATTGGGAAATGTTATTGTTATGTCTCAAGCTGCATGGCAGGTGTTCATAGTATTGATACCTGTCATGGCAGCTAGCATATGGTACCAGCGGTACTATTCTGCATCTGCAAGAGAATTGGCACGATTGGTTGGTACATGTCAAGCTCCGGTTATACAACATTTTTCTGAAACAATTTCTGGATCAACAACCATAAGAAGTTTTGAACAAGAATCAAGATTTAATGACATAAACATGAAGTTGATAGACAGATATTCCCAACCCAAACTATACAGTGCTACTGCAATTGAATGGCTGAATTTCCGATTGGATATTTTATCCACTGTCATATTTGCCTTCTGTTTGGTATTCTTGGTATCTTTCCCAAATTCAATGACTGCTCCTGGCATTGCGGGATTGGCTGTGACATATGGACTTAATCTAAATATTCTGCAAACTAGGGTAATCTGGTTTCTTTGTGACTTGGAGAAAAAGATTATATCTGTTGAGAGAATACTCCAGTACACATCCCTCCCTAGTGAAGCTCCTCTTGTGATTAAAGACAACCAACCGGATTGTTCTTGGCCATCATTCGGAGAGGTTCATATCTGGAATTTGCAGGTTCGATATGCTCCTCACTTGCCTATTGTTTTACGAGGTCTTACTTGCACTTTTACTGCTGGATCAAAAACTGGTATTGTGGGAAGAACAGGAAGTGGAAAATCAACTCTTGTGCAAACACTTCTCCGACTTATTGAACCTGTGGATGGAAAAATATTAATAGATAACATTAACATATCTTTGATTGGAATTCATGATTTGCGGTCTAGACTCAGCATTATTCCTCAAGATCCAACCATGTTTGAAGGGACTATAAGAACCAACCTGGATCCACTAGAAGAGTACACAGATGAACAGATTTGGGAGGCTCTAGATATGTGCCAACTTGGAGATGATGTAAGGAAAAAAGAAGGGAAGCTGGACTCCATAGTGACTGAGAATGGAGAAAATTGGAGTATGGGTCAAAGGCAGTTGGTCTGCCTAGGCCGTGTTCTACTGAAGAAAAGCAAGATCTTGGTGCTTGATGAAGCTACTGCATCTGTTGACACAGCCACAGATAATATTATTCAGCAAACAGTTAAGCAACATTTTTCAGAATGCACAGTCATTACCATTGCTCATAGGATAACTTCTATCATCGACAGTGACATGGTTTTATTCTTAAATCAAGGGTTGATAGAAGAATATGATTCACCTAAGAAACTTCTTAAGAACAAAACTTCATCTCTAGCTCAACTAGTTGCAGAATACACAAGGAGGTCAAACTCTGGTTTTGGAAATTAA 3918 0.3928 MAKLAPLEDPLLGGDSTSINNSDPIKTRGNENLTRYSNAGLFSILSFSWITPLITLGNHKTLNHEDLPLLATADSAYGVYPTFRRXLESECGSVKNVTTLKLVKVLFLSTWQGIFLSGLFAFLYACASYVGPFLIDILVGYLNGEYMFKNEGYVLAATFVAAMLVECLSLRHWMFRFQQVGVRMQSMLVEMIYAKGLTLSCQSKEVRSTGEIINLMTVDAERIGEFCWYMHDPWXCVLQLALALLILYRSVGVASLAALAATVIVMLLNHPVASLQEKFQGKIMEFKDKRMKATSEILKNMRILKLQAWEMKFLSKIIQIRKSEETWLRKFLAGTATIRFFFHNAPTFIAVVTFGACVLVGIPLESGKVLSALATFRILQMPIYSLPDTISTIAQTKVSLDRIASFLRLDELQTDIVQKLPWGSSDKAIELVDGNFSWDLCSPNPTLKNINLNVYHGMRVAVCGTVGSGKSSLLSCIIGEVPKISGTLKICGTKAYVSQSPWIQSGKIEDNILFGKEMDNEKYEKVLEACSLTKDLEVLPFGDHTIIGEKGINLSGGQKQRVQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGHLKSKTVIYVTHQVEFLPDADLILVMREGRITQSGKYKDILKTGTDFMELVGAHRAALSSIKSLERRPTFKTSSTTDEKTNLLSDFEFEQNVEDIHVENDKPNGTVEPKGQLVQEEEREKGRVGFKVYWKYITTAYGGALVPFILLSQILTVGFQIASNYWMTVATPVSATAETDIGSFTLMVVYVAFEFGSSIFTFARSFLAVIAGYKTATVLFDKMHLCIFRAPISFFDSTPSGRILNRASIDQSSLDMYIANILWAITLNLIQLLGNVIVMSQAAWQVFIVLIPVMAASIWYQRYYSASARELARLVGTCQAPVIQHFSETISGSTTIRSFEQESRFNDINMKLIDRYSQPKLYSATAIEWLNFRLDILSTVIFAFCLVFLVSFPNSMTAPGIAGLAVTYGLNLNILQTRVIWFLCDLEKKIISVERILQYTSLPSEAPLVIKDNQPDCSWPSFGEVHIWNLQVRYAPHLPIVLRGLTCTFTAGSKTGIVGRTGSGKSTLVQTLLRLIEPVDGKILIDNINISLIGIHDLRSRLSIIPQDPTMFEGTIRTNLDPLEEYTDEQIWEALDMCQLGDDVRKKEGKLDSIVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKQHFSECTVITIAHRITSIIDSDMVLFLNQGLIEEYDSPKKLLKNKTSSLAQLVAEYTRRSNSGFGN* 1306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0278 1305 CDD ABCC_MRP_domain1 429 629 - -
Vra10g0278 1305 CDD ABC_6TM_ABCC_D1 116 403 IPR044746 GO:0140359
Vra10g0278 1305 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 5 1305 - -
Vra10g0278 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 426 651 IPR027417 -
Vra10g0278 1305 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1059 1293 IPR003439 GO:0005524
Vra10g0278 1305 CDD ABC_6TM_ABCC_D2 740 1034 IPR044726 GO:0140359
Vra10g0278 1305 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 429 652 IPR003439 GO:0005524
Vra10g0278 1305 SUPERFAMILY ABC transporter transmembrane region 740 1041 IPR036640 GO:0005524|GO:0016021
Vra10g0278 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1051 1284 IPR027417 -
Vra10g0278 1305 ProSitePatterns ABC transporters family signature. 554 568 IPR017871 GO:0005524
Vra10g0278 1305 SUPERFAMILY ABC transporter transmembrane region 111 408 IPR036640 GO:0005524|GO:0016021
Vra10g0278 1305 SMART AAA_5 1085 1270 IPR003593 -
Vra10g0278 1305 SMART AAA_5 456 629 IPR003593 -
Vra10g0278 1305 Pfam ABC transporter transmembrane region 114 382 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra10g0278 1305 Pfam ABC transporter transmembrane region 742 985 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra10g0278 1305 Pfam ABC transporter 447 581 IPR003439 GO:0005524
Vra10g0278 1305 Pfam ABC transporter 1077 1224 IPR003439 GO:0005524
Vra10g0278 1305 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 115 395 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra10g0278 1305 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 5 1305 - -
Vra10g0278 1305 Gene3D - 1042 1295 IPR027417 -
Vra10g0278 1305 Gene3D - 411 671 IPR027417 -
Vra10g0278 1305 Gene3D ABC transporter type 1, transmembrane domain 704 1040 IPR036640 GO:0005524|GO:0016021
Vra10g0278 1305 Gene3D ABC transporter type 1, transmembrane domain 91 410 IPR036640 GO:0005524|GO:0016021
Vra10g0278 1305 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 742 1022 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra10g0278 1305 CDD ABCC_MRP_domain2 1057 1277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0278 Vra-Chr10 7269014 7275176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0278 429 675 Calmodulin-binding Proteins AT2G36910 28.839 2.34e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0278 - K05666 gmx:106794105 2228.75