Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0277 ATGAACACTGCTGATTGGGATCAAGAACTGAGAAAGTATCAGGATGTAATAGCTTCAGGTACCAAGAGTATGAAAATAAAGGCCATGATGATGTTGGCACGTTTTTCTAAGCATGCCCCTGAGCATGTTTTAGCTAGCACCATACCCATTCTCACTGAGATTCTTGGTCACAATGTTTCAAATGACTCTGGTCCTACACTTCAAGAGGCTGCTGCTTATTGCTTGAAGTGCATTGCTTGCAGGGGTGAGGGTGCGTTGGCCGTTGAAATTGGTGGACACGGTGCCCCTTATTCTTTGATGAGGTTGTTGTCTCACTCTGATGGAAGGATGCAGAAGGTCCTGATAAAGTGTTTGCTCGTTATTGTTAGTTTTTGTAATGCAAGTAGGACAGCTGTTGCCACCAATGGTGGGGTAGAAATGATCATTGGTTTGTTGAGTTCTTGCACCAATGATACTAAGAGGTATTTGTTGGAGATTTTGAGTGTGTTAGCATTGAGGAGGGATGTTAGGAAGGCTCTCACTAGACTGAGAGCTCTACATTATGTTGTGGAGGCTGCTAGTTTTGGGAGCATGGTGTCTAGGGAAAGGGCTTGTCAAGCAATTGGGTTGCTTGGAGTCACCAGACAGACTCGGCGTATGCTTGTTGATTTGGGAGCAATTCCAGTGCTTGTGTCCTTGTTTCGTGAAGGAGAACACTCCACAAAGCTTGTTGCTGGTAATTCTCTTGGTGTGATATCTGCTCATGTTGATTACATTAGGCCGGTTGCTCAAGCTGGGGCTATTCCCCTTTATGCTGAGCTTCTTGAAGGACCTGATCCCTCTGGGAAAGAGATAGCTGAGGATGTTTTTTGTATATTGGCTGTTGCTGAGGCTAATGCTGTTGAAATTGCCGGTCACTTGGTGAGGATTCTGAGAGAAGGTAATGATGAGGCAAAGGCTTCTGCAGCGGATGTGATGTGGGATCTGTCGGGTTACAAGCATTCAATGTCTGTAGTACGGGATTCAGGTGCGATTCCTATTCTTGTTGAGCTTTTGGAGACTGGGAGTGAAGATGTGAAGGTGAATGTTTCTGGGACATTTGCTCAACTGAGCTATGATGGAACTGATAGAATGTCACTTGCTGAGGCAGGGGCGATTCCAATTCTCATAGACTTGATGAATGATGTTGATGAGGTTGAGGAACTAAGGGATAATGCTACGGAGGCTCTTGTAAATTTTTATGAAGATCCATTTTATCATGATAGAGTGTCGGATGCAATTAATGTTTCTTCCTTCAGAAATATGCAGAATAGGTTAGTTCATATTCGGGCATCGAATGAGCACATGGCTAGATCCTTGAGAAGAATGAGTGTTGAGCAGCTCACATGGAACCCAGATCTTGTATAA 1386 0.4423 MNTADWDQELRKYQDVIASGTKSMKIKAMMMLARFSKHAPEHVLASTIPILTEILGHNVSNDSGPTLQEAAAYCLKCIACRGEGALAVEIGGHGAPYSLMRLLSHSDGRMQKVLIKCLLVIVSFCNASRTAVATNGGVEMIIGLLSSCTNDTKRYLLEILSVLALRRDVRKALTRLRALHYVVEAASFGSMVSRERACQAIGLLGVTRQTRRMLVDLGAIPVLVSLFREGEHSTKLVAGNSLGVISAHVDYIRPVAQAGAIPLYAELLEGPDPSGKEIAEDVFCILAVAEANAVEIAGHLVRILREGNDEAKASAADVMWDLSGYKHSMSVVRDSGAIPILVELLETGSEDVKVNVSGTFAQLSYDGTDRMSLAEAGAIPILIDLMNDVDEVEELRDNATEALVNFYEDPFYHDRVSDAINVSSFRNMQNRLVHIRASNEHMARSLRRMSVEQLTWNPDLV* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0277 461 Gene3D - 11 205 IPR011989 -
Vra10g0277 461 Pfam Armadillo/beta-catenin-like repeat 331 364 IPR000225 GO:0005515
Vra10g0277 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 377 406 IPR000225 GO:0005515
Vra10g0277 461 PANTHER U BOX DOMAIN-CONTAINING 3 460 - -
Vra10g0277 461 SMART arm_5 248 288 IPR000225 GO:0005515
Vra10g0277 461 SMART arm_5 35 80 IPR000225 GO:0005515
Vra10g0277 461 SMART arm_5 325 365 IPR000225 GO:0005515
Vra10g0277 461 SMART arm_5 366 408 IPR000225 GO:0005515
Vra10g0277 461 SMART arm_5 125 165 IPR000225 GO:0005515
Vra10g0277 461 SMART arm_5 207 247 IPR000225 GO:0005515
Vra10g0277 461 Coils Coil 382 402 - -
Vra10g0277 461 SUPERFAMILY ARM repeat 59 408 IPR016024 -
Vra10g0277 461 Gene3D - 208 427 IPR011989 -
Vra10g0277 461 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 10-LIKE 3 460 - -
Vra10g0277 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 336 378 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0277 286 406 U-box Gene Family AT3G46510 27.273 3.67e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0277 - - gmx:100819735 811.601