Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0273 ATGCAAACATCTCAGAATCATAAAATTTCTTATGGCTCTGGTGGGTTCTATGTTGAGCCTGTGCAAAATTTGGAGTCATATTGCTTACCATCAAGTGAGAACATAGACAATTACTCTTCCTCTGATAACAGCAGCCAAACAACCTACCCTTCTGTCCAAACTTTAGAGCAATATTGCACCCTTGAATCTGCTTCCACAAGCAACAGTTTCCCTTGCCAAAATTCTCCACCTGCTCTCAGTTTCTCATCAAACAATAGCCCATTGTCAAAGATAGAGTCAAATTCATACGTGCTAAGGCCACAACATTCTCTTGAAATTGCTAGTGGCCCACCTGAGAATGATCCTTACACGATTCTCGACCTTGATGACCTGTCGCATAAGATGAGAGAACTGGAAACTGCTATGCTGGGACCTAATGTGGATATGCTAGATATCTACGGCGCTCTAATGCCAGGAGAAGCTGATTCAATTTTGTTAGAAGCTGAGAAGTGGAAGAAAATGATGGAGATGGTATCTAGAGGGGATTTGAAAGAGATGCTTTATACTTGTGCAAAGGCAATGGCTGTGAATGATATGGAGACAACTGAATGGATGATGTCAGAGTCACGCAAGATGGTTTCCGTTTCTGGCAATCCGATTCAGCGGTTGGGAGCATACATTGTGGAGTCTCTTGTAGCAAGGATGGCTGATTCAGGAAGCACAATCTATAAATCCTTGAAATGTAGTGAGCCTACTGGTAATGAGCTACTTTCATACATGCATGTACTGTATGAAGTTTGTCCATATTTCAAGTTTGGATACTTGTCAGCAAATGGAGCAATTGCTGAAGCTCTGAAGGAGGAAAGTGAAGTTCACATAATAGACTTTCAGATTTCCCAGGGAACTCAATGGGTGAGCCTGATTCATGCTCTTGCTCACCGTCCCGGAGGGCCACCAAAGATCAGAATATCAGGTGTTGATGACTCCTTTTCATCTTATGCCCGGGGAGGAGGACTTGATATTGTAGGGAAAAGGTTATCAGCACTTGCAGAGTCATGCAATGTACCCTTTGAGTTCAATGCTGTGAGAGTACCTGCTTCTCAAGTGCAACTTAAAGACCTTGAACTACGCCCTTATGAAGCTGTAGCTGTGAACTTTGCCATCATGTTGCACCATGTGCCTGATGCAAGTGTGAATGGCCACAATCATCGCGATAGGTTGTTGAGATTAGCCAAGCACTTGAATCCTAAGGTGGTGACTCTTGTGGAGCAGGAATTTAACACCAACAACGCCCCATTCTTGCAGCGATTCGTTGAGACAATGAACTACTACTTGGCCGTTTTTGATTCAATTGATGCTGCTCGTCCAAGGGAGGACAAAGAGAGGATTAATGTGGAGCAGCATTGTTTGGCTCGTGAAGTTGTCAACTTAATAGCATGTGAAGGAGAAGAAAGAGTTGAACGGCATGAGCTTCTGAATAAGTGGAGAATGCGTTTCACAGATGCTGGATTTTCACCTTATCCTTTGAACTCCTTTATTAATTCTTCAATCAAAGATCTTCTCCAGAGCTACCATGGTCACTACACTCTACAAGAGAAAGATGGTGCACTTTTTCTTGGTTGGAAGAATCAAGTTCTTATTGCCTCTTGTGCTTGGAGATGA 1641 0.4302 MQTSQNHKISYGSGGFYVEPVQNLESYCLPSSENIDNYSSSDNSSQTTYPSVQTLEQYCTLESASTSNSFPCQNSPPALSFSSNNSPLSKIESNSYVLRPQHSLEIASGPPENDPYTILDLDDLSHKMRELETAMLGPNVDMLDIYGALMPGEADSILLEAEKWKKMMEMVSRGDLKEMLYTCAKAMAVNDMETTEWMMSESRKMVSVSGNPIQRLGAYIVESLVARMADSGSTIYKSLKCSEPTGNELLSYMHVLYEVCPYFKFGYLSANGAIAEALKEESEVHIIDFQISQGTQWVSLIHALAHRPGGPPKIRISGVDDSFSSYARGGGLDIVGKRLSALAESCNVPFEFNAVRVPASQVQLKDLELRPYEAVAVNFAIMLHHVPDASVNGHNHRDRLLRLAKHLNPKVVTLVEQEFNTNNAPFLQRFVETMNYYLAVFDSIDAARPREDKERINVEQHCLAREVVNLIACEGEERVERHELLNKWRMRFTDAGFSPYPLNSFINSSIKDLLQSYHGHYTLQEKDGALFLGWKNQVLIASCAWR* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0273 546 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 17 545 - -
Vra10g0273 546 Pfam GRAS domain family 176 546 IPR005202 -
Vra10g0273 546 ProSiteProfiles GRAS family profile. 167 546 IPR005202 -
Vra10g0273 546 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 17 545 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0273 Vra-Chr10 7180723 7183864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0273 1 546 GRAS Transcription Factor Family AT1G50600 55.797 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra10g0273 GRAS 2.9e-129 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0273 - - gmx:100785400 957.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0273 10 7180723 7183864 Vra6g0160 6 1170997 1174158 PCT