Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0272 ATGGACACCGCTGAAGCCCTCTCCGACGATCCAAATCGACCTGGGTCGAGACCCAATTCTGCCCCAGACGCTGCTCCGGCCGGCGGCGGCGCAAGGTACAAGCTCATGTCACCGGCGAAGCTCCCGATCTCACGCTCGCCGTGCGTCACGATTCCGCCGGGGCTCAGTCCGACTTCGTTTCTCGAGTCGCCGGTGCTGCTCTCCAACATGAAGGTGGAACCTTCACCGACTACAGGATCCCTTTTTATGCTTCATCAAACAGCTCATGCTTCTGTGACTTCTTCTGCATCTGCTTCATTTCCTGTAACCACTGCAAGCTTCAATACCAATACTATTGATGACCGAAAACCCAGCTTCTTTGAGTTTAAACCGCACAGTAGACCAAATATGGTTCCTGCAGACCCTAACAATCATGCAAGTGAAAAGTCTACTCAAATAGATGGTGAAGGAAAAACTCAACCTTTTGATTCATCACCATTAGTAAAAAGTGAGATAGCGGTCCCTTCAAATGAATTAAGTCTATCATCACCTGTTCAAATTGTTAGCTCGGGAGCAAATGCCCGTGTTGAAGGTGATTTGGATGAACTGAACCCTAGGAGCAACATAGCAAATGGGCTTCAAGCATCAAATATTGACAATAAAGGAAGTGGACTTTCCGTTGCAGCTGAGCGAGTATCTGATGATGGATACAACTGGAGAAAGTATGGGCAGAAACATGTTAAAGGAAGTGAGTTTCCACGCAGTTATTACAAATGTACACATCCTAACTGTGAAGTTAAGAAACTATTTGAACGCTCTCATGATGGGCAAATCACTGAGATAATTTATAAGGGAACACATGATCATCCGAAACCCCAGCCAAACCGGCGATACTCTAGTGGAACTATGATGACCATGCAAGAAGAGAGGTCTGATAAAGCTTCTTTCCGAGATGAGAAAGGATCCAATATTTGTGGCCAGGTGTCTCACCCAGCTGAGACTGACAGTACTCCTGAGTTATCGCCTGCAGCAACAAATGATGGTGATCCAGAGGGTACAGGATTTTTTTCAAATCGGAGCAATGATGAGGTTGATGATGATGATCCCTTATCAAAGCGAAGAAAAATGGAGCTTGCAAATGCTGACATTACTCCTGTAGTTAAGCCTATTAGGGAGCCACGGGTCGTTGTACAAACTCTGAGTGAGGTTGATATATTGGATGATGGTTACCGCTGGCGCAAGTATGGGCAGAAGGTGGTGAGAGGCAATCCTAACCCTAGGAGTTATTACAAATGCACAAACACGGGGTGCCCCGTTAGGAAACATGTGGAGAGGGCTTCTCATGATCCAAAAGCTGTGATAACCACATATGAGGGGAAACACAATCATGATGTGCCAACTGCAAGGAATAATAGTTGCCATGAGATTGCAGGATCAGCAAGTGCTGCTAGTGGACAGACAAGAATTAGGCCAGAAGAAAGTGACACCATCAGCCTTGACCTTGGTATGGGAATTAGCCCTGCTTCGGAAAACACACCAAATAGTCAAGGTAGAATGATGCTTCCTGAATTTGGGGACAGCCAAGCTCATACCAGCAACTCCAATTTCAAGTTTGTTCATACTTCGGGGGCACCGGTGTACTTTGGTGTTCTAAATAACAACTCTAACCCATATGGCTCTAAAGAAAATCCAAGTGATAGTAGTACATCTTTAAACCATTCTGCATATCCCTGCCCTCAGAACGTGGGAAGAATACTAATGGGTCCGTAA 1749 0.458 MDTAEALSDDPNRPGSRPNSAPDAAPAGGGARYKLMSPAKLPISRSPCVTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLFMLHQTAHASVTSSASASFPVTTASFNTNTIDDRKPSFFEFKPHSRPNMVPADPNNHASEKSTQIDGEGKTQPFDSSPLVKSEIAVPSNELSLSSPVQIVSSGANARVEGDLDELNPRSNIANGLQASNIDNKGSGLSVAAERVSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPNRRYSSGTMMTMQEERSDKASFRDEKGSNICGQVSHPAETDSTPELSPAATNDGDPEGTGFFSNRSNDEVDDDDPLSKRRKMELANADITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNNSCHEIAGSASAASGQTRIRPEESDTISLDLGMGISPASENTPNSQGRMMLPEFGDSQAHTSNSNFKFVHTSGAPVYFGVLNNNSNPYGSKENPSDSSTSLNHSAYPCPQNVGRILMGP* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0272 582 Gene3D WRKY domain 218 286 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra10g0272 582 Gene3D WRKY domain 384 460 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra10g0272 582 SUPERFAMILY WRKY DNA-binding domain 391 459 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra10g0272 582 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 21 561 IPR044810 GO:0003700
Vra10g0272 582 Pfam WRKY DNA -binding domain 400 456 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra10g0272 582 Pfam WRKY DNA -binding domain 227 283 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra10g0272 582 MobiDBLite consensus disorder prediction 550 570 - -
Vra10g0272 582 SUPERFAMILY WRKY DNA-binding domain 223 285 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra10g0272 582 MobiDBLite consensus disorder prediction 277 366 - -
Vra10g0272 582 MobiDBLite consensus disorder prediction 550 582 - -
Vra10g0272 582 MobiDBLite consensus disorder prediction 1 33 - -
Vra10g0272 582 SMART WRKY_cls 399 458 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra10g0272 582 SMART WRKY_cls 226 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra10g0272 582 ProSiteProfiles WRKY domain profile. 394 459 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra10g0272 582 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 21 561 - -
Vra10g0272 582 MobiDBLite consensus disorder prediction 288 302 - -
Vra10g0272 582 ProSiteProfiles WRKY domain profile. 221 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra10g0272 582 MobiDBLite consensus disorder prediction 121 159 - -
Vra10g0272 582 MobiDBLite consensus disorder prediction 320 336 - -
Vra10g0272 582 MobiDBLite consensus disorder prediction 136 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0272 Vra-Chr10 7173012 7178774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0272 36 582 WRKY Transcription Factor Family AT4G26640 56.115 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra10g0272 WRKY 1.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0272 - - gmx:100781491 990.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0272 10 7173012 7178774 Vra6g0162 6 1177996 1183730 PCT