Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0270 ATGATGCCAAGTGTTAAGCCTGATGTATCTGAGAGAGACTCAGAGCCATTTGTTGAAATTGATCCAACAAGAAGATATGGCAGATACAATGAACTGCTAGGATGTGGTGCTGTGAAAAAGGTGTACAGGGCATTTGATCAGGAAGAGGGGATAGAGGTGGCATGGAACCAAGTGAAACTGAGGAACTTCAGTGATGATCCTGCAATGGTGGAAAGGCTTTACTCTGAGGTGAGGTTGCTCAGAAGCTTGACCAACAAAAACATCATCTCCCTTTACAGCGTTTGGAGGGATGAGAAGCACAACACTTTGAACTTCATCACTGAGGTCTGCACAAGTGGGAATCTGAGGGAGTACAGAAAGAAACACAGGCATGTGTCCATGAGAGCCTTGAAAAAGTGGTCCAAGCAGATTTTGGAAGGGTTGAATTACTTGCATGTTCATGACCCTTGTATCATCCACAGAGACCTCAACTGCAGCAATGTCTTTGTCAATGGGAACACTGGCCAGGTTAAGATTGGTGACTTGGGTTTGGCAGCAATTGTGGGGAAGAGCCACTCTGCACATTCAGTTCTTGGGACACCAGAATTCATGGCACCTGAGTTGTATGATGAAGACTACACTGAAATGGTTGACATATACTCATTTGGAATGTGTGTGTTAGAGATGGTAACACTAGAGATTCCTTACAGCGAATGTGACAATGTTGCTAAGATATACAAGAAGGTGTCATCAGGTGTGAGACCTCAAGCCCTGAGCAAGATCCAAGATCCTGAAGTGAAGGCCTTCATTGAGAGGTGTCTTGCTCAGCCAAGGGCTAGACCTTCTGCAGCAGAGTTGCTCAAGGACCCCTTCTTTGATTTGCTTGATTATGATGAAGATGATGACTCTAATACTTCATGA 900 0.4467 MMPSVKPDVSERDSEPFVEIDPTRRYGRYNELLGCGAVKKVYRAFDQEEGIEVAWNQVKLRNFSDDPAMVERLYSEVRLLRSLTNKNIISLYSVWRDEKHNTLNFITEVCTSGNLREYRKKHRHVSMRALKKWSKQILEGLNYLHVHDPCIIHRDLNCSNVFVNGNTGQVKIGDLGLAAIVGKSHSAHSVLGTPEFMAPELYDEDYTEMVDIYSFGMCVLEMVTLEIPYSECDNVAKIYKKVSSGVRPQALSKIQDPEVKAFIERCLAQPRARPSAAELLKDPFFDLLDYDEDDDSNTS* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0270 299 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0270 299 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 2 296 - -
Vra10g0270 299 SUPERFAMILY Protein kinase-like (PK-like) 20 286 IPR011009 -
Vra10g0270 299 Gene3D Transferase(Phosphotransferase) domain 1 110 288 - -
Vra10g0270 299 CDD STKc_WNK 25 285 - -
Vra10g0270 299 Gene3D Phosphorylase Kinase; domain 1 10 108 - -
Vra10g0270 299 PIRSF TyrPK_CSF1-R 25 131 - -
Vra10g0270 299 PIRSF TyrPK_CSF1-R 113 282 - -
Vra10g0270 299 PANTHER SERINE/THREONINE-KINASE WNK11-LIKE PROTEIN 2 296 - -
Vra10g0270 299 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0270 Vra-Chr10 7140742 7142819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0270 1 286 MAP Kinase Kinase Kinase AT5G55560 81.379 0.0 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vra10g0270 Pkinase 1.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0270 K08867 - gmx:100782039 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0270 10 7140742 7142819 Vra6g0164 6 1201083 1203831 PCT