Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0269 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGAATATCTTGGGACACTGATGAGGAACGGCTTAAGGAATATTTTGGGAAATATGGGGAGGTGATAGAGGCTGTGATCATGAGGGATCGCGTAACAGGTCGTGCTCGTGGCTTTGGTTTTGTTGTCTTTGCTGATCCTTCTGTTGCAGAAAGAGTAATCATGGATAAGCACATAATTGATGGGCGAACAGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAGCTCAATATAAGTAGGCAGTCTGGTAGTGCACACGCATCTCCTGGTCCTGGACGCACCAAAAAAATCTTTGTTGGAGGTTTACCATCAACAATCACCGAAAGTGATTTTAAGAAGTATTTTGATCAGTTTGGTACAATTACAGATGTTGTAGTTATGTATGATCATAATACGCAGAGGCCAAGAGGTTTTGGCTTCATTACCTATGACTCTGAAGAAGCTGTGGATAGAGTTCTTTATAAAACTTTTCATGAACTCAATGGTAAGATGGTTGAAGTCAAGAGGGCAGTTCCCAAAGAGCTTTCCCCCGGTCCCAGCCGAAGCCCATTGATAGGATTTAACTATGGTTTGAATAGGGCCAGTAATTACCTAAACAGTTATGCTCAGGGTTATAGTATGAGTCCAATAGGAGGATATGGAGTGAGGATGGATGGTAGGTTTAGTCCTCTTACTGGTGGTAGAAGTGGATTTACTCCCTTTGGCAACACTGGTTACGGAATGGGAGTGAATTTGGATTCAGGATTGAGCCCGACCTTTGGAGGGACTTCAAATTATGGGAGCAATCTAGGATATGGTCGACTATTGAATCCTTTCTATAGTGGCAACTCTGGCAGATACACCACTCCTATAGGCTATAGTGGGGTTAATGGGAGAAGCGATAATGTTATGAACTCACCATCTCGTAATTTATGGGGAAATGGGGGCCTCAATAATGCCAATAATCCTGTCAGCCCCAGCCCTTTCCTTGGATCTGGAAGTGGAGCTTTTGGTGTTTCCATTGGAAATAGTGGCACAGGCTGGGGTCCATCCATTCCAGCCCAGGGTGGAGGTGCTGCTTCTGGTTATGGTACTGGGAATAATGTTTATGAAGGTGGAGATAGCAGCTTTGGTCTAGGTGGAGCAGGTTACGGAAGAAACAGCAGTTCAGGTGTGACTCCAGCCTCTACATTTAATGTTTCAACAGGTGGTTATGAAGGATCATATGGCGACCTGTACCGTACTGGCAGTGGTTCGGTTTACAACGACTCTGCTTGGCGTTCTGCTGTGTCTGAGATTGATGGTTCTGGTTCATTTAGTTATGGTCTTGGCGGTATAGCTTCAGATGACCCAGTAAAGAATTCTGAGGGTTATATTGGAAACTACAATGTTACTAGTAGACAACCGAATAGAGGAATCGCTGCCTAG 1440 0.4451 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRVTGRARGFGFVVFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQLNISRQSGSAHASPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPSRSPLIGFNYGLNRASNYLNSYAQGYSMSPIGGYGVRMDGRFSPLTGGRSGFTPFGNTGYGMGVNLDSGLSPTFGGTSNYGSNLGYGRLLNPFYSGNSGRYTTPIGYSGVNGRSDNVMNSPSRNLWGNGGLNNANNPVSPSPFLGSGSGAFGVSIGNSGTGWGPSIPAQGGGAASGYGTGNNVYEGGDSSFGLGGAGYGRNSSSGVTPASTFNVSTGGYEGSYGDLYRTGSGSVYNDSAWRSAVSEIDGSGSFSYGLGGIASDDPVKNSEGYIGNYNVTSRQPNRGIAA* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0269 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Vra10g0269 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Vra10g0269 479 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 479 - -
Vra10g0269 479 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Vra10g0269 479 SMART rrm1_1 107 179 IPR000504 GO:0003723
Vra10g0269 479 SMART rrm1_1 7 78 IPR000504 GO:0003723
Vra10g0269 479 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Vra10g0269 479 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 479 - -
Vra10g0269 479 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Vra10g0269 479 Gene3D - 105 185 IPR012677 -
Vra10g0269 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Vra10g0269 479 Gene3D - 6 87 IPR012677 -
Vra10g0269 479 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Vra10g0269 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Vra10g0269 479 MobiDBLite consensus disorder prediction 86 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0269 Vra-Chr10 7085084 7089385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0269 5 180 Eukaryotic Initiation Factors Gene Family AT2G23350 23.596 1.67e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0269 K14411 - gmx:100805131 902.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0269 10 7085084 7089385 Vra6g0166 6 1213718 1218050 PCT