Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0261 ATGGCTAAGCTTTCCCCTCTTGAAGAGACCCTTCTAAACGGTGACTCCAGTAAGACAAAAGGAAATGAAAATTTAACCCAAAATTCAAATGCAGGATTTTTCAATATTCTCACTTTCTCATGGATCAGTCCATTAATAACAGTAGGCAATGAGAGGACTTTAAACCATGAAGACATCCCACGTCTTGGTACTGGTGACAGTGCCTATGGGATTTTTCAAACTCTTAGAAGCAAATTAGAGTCAGAGTGTGGTAGTGTTAGGAATGTGACAAGTCTTAAGCTGGCCAAGGTTTTATTCTTGTCGACATGGCAAGGGATCTTCTTATCAGGTTTATTTGAATTCTTGTCTACGTGTGCTTCTTATGTAGGACCCTTTCTTATTGATATCCTTGTTCAGTACCTCAACGGAGAACACATGTTTAAAAATGAAGGATATGTTTTGACTGCGGCATTTGTTGCTGCAAAGCTTTTGGAGAGTCTTGCAGACAGGCACTGCATGTTCAGGTTTCAGCAGGCTGGGGTTCAAATTCAATCAAAGTTGGTGGCAATGATCTATGCTAAAGGTTTGACTCTTTCATGTCAATCAATGGAGGTTCATAGCACAGGGGAAATCATCAACTTAATGACTGTTGATGCTTCAAGGATTGGAGAATTTTGTTGGTATATGCACCGACCCTGGATGTGTGTTTTGCAAGTTGCTCTCGCCTTGTTGATTCTCTATAGAAGTGTAGGGGTTGCTTCAATAGCTGCTCTTGGTGCGACTGTGATTGTAATGTTGCTAAACCATCCCGTGGCATCATTGCAAGAAAAGTTTCAAGGCAAGGTAATGGAGTCCAAAGATAAAAGAATGAAGGCTACGTCTGAGATTCTTAAGAATATGAGGATTCTAAAACTGCAAGCATGGGAGATAAAGTTCTTATCAAAGATTATTCAGCTTAGGAAAACGGAGGAGATATGGCTGAAGAAATTTCTCGCTGGCTCAGCAGTTGTTAGATTTGTCTTCAATAGTGCCCCCACTTTTATCGCAATGGTTACTTTTGGTACTTGTGTTCTTGTAGGCATCCCACTTGAATCAGGAAAGGTCTTATCAGCACTTGCAACATTCAGAATTCTTCAAATGCCTATCTACGCTCTTCCTGACACGATTACAATGATTGCACAAAGTAGGATTTCTCTTGAAAGGATTGCATCATTTCTTCGTTTAGAAGAGTTGCAGACTGATGTAGTAGAGAAGCTTCCTTGGGGTAGTTCTGATAAGGCAGTTGAATTAGTAGATGGAAATTTCTCATGGGATTTATCTTCCTCTAATCCAACATTGAAAAACATCAATCTCACAGTTTTTCATGGTACGAGGGTTGCTGTATGTGGTACTGTTGGATCAGGAAAGTCTAGTTTACTTTCTTGCATTATAGGGGAAGTCCCAAAGATATCTGGGAGTCTGAAAATATGTGGAACAAAGGCCTATGTTTCTCAATCACCATGGATACAGAGTGGCAAGATAGAAGAGAACATATTGTTTGGTAAAGAGATGGACAGGGAAAAGTATGAGAGGGTGCTAGAAGCATGTTCCTTGAAAAAAGACCTTGAGATTCTACCATTTGGAGATCAGACCATTGTTGGAGAGAAAGGGATCAATTTGAGTGGTGGACAGAAGCAAAGAGTGCAAATAGCGCGTGCTATATACCAAGATGCTGATATATATCTTTTTGATGATCCATTCAGTGCGGTGGATGCTCATACGGGATCTCATCTTTTTAAGGAGTGCTTGCTTGACCTTTTAAAATCCAAAACTGTGATATACGTAACCCATCAAGTAGAATTCTTACCTGATGCTGATCTAATACTGGTCATGAGAGAAGGAAGAATAACTCAATCGGGAAAATTCAATGACATTCTCAGGTCAGGGACCGATTTTATGGAACTTGTAGATGCACACAGAGCAGCTTTATCTTCATCAATTAAGTCCTTAGAGAGAAGACCAACATTTAAACAACCAAGTTCCACCAAGGAGAACAAAAATTCATTAACTGATTTTGAATATGAGGAAAATGAGGAAAACATACATGATAAGAAGGATAATAAAGATGACAGAAATGAATCAAAAGGACAACTTGTTCAAGAAGAAGAACGGGAAAAGGGTATAGTTGGGTTTAATGTATACTGGAAATACATCACAACAGCTTATGGAGGAGCTCTTGTGCCCTTCATATTACTTGCTCAGATACTCACCGTGGGTTTTCAAATTGCAAGCAATTACTGGATGACAGTGGCAACTCCTGTTTCAGGAACTGCTGAACCTGATATTGGAAGCCTTACACTTATGCTTGTCTATGTCGCATTGGCAATCGGAAGTTCAATTTTCACCCTTGCCAGAGCATTTATTGCTGTGATAGCTGGATATAAAACAGCCACTGTGCTCTTCAATAAAATGCATTTCTGTGTTTTTCGAGCACCAATATCTTTTTTTGATGCCACCCCAAGTGGTCGAATCCTGAATAGAGCTTCAACAGACCAAAGTGAACTAGATATGAGCATTCCATCATTAGTATGGGCAGTTACCCTTAATTTGACTCAAATCTTGGGAAATATTGTTATAATTTCTCAAGCGGTATGGCAGATCTTTATAGTATTGATTCCTGTAATGGCAGCATGCATATGGTACCAGCGATACTATTCTGCATCTGCAAGGGAACTGGCACGATTAGTTGGTACATGTCAAGCTCCAGTTATACAACATTTTTCAGAAACAATTTCAGGATCAACAACCATAAAATGTTTTGAGCAAGAATCAAGATTTAATGACATAAATATGAAATTGATAGACAGATATTCCCAACCTAAATTATACAGTGCTGCTGCAATTGAATGGTTGAATTTCAGATTGGATATTTTATCCACTCTCACATTTGCCTTCTGTTTGGTTTTCTTGATATCTTTTCCAAACTCATTTACTGCTCCAGGCATTGCTGGACTGGCTGTGACATATGGACTTAATCTAAACTCTCTACAGACTAACATAATCTGGTTTCTTTGCACTTTGGAGAACAAAATTATATCTGTTGAAAGAATACTTCAATATACATCTCTCCCAAGTGAAGCTCCTCTTGTGATTAAAGACAACCAGCCGGAATATTATTGGCCATCATTTGGTGAGGTTCATATCCGGGATCTACAGGTTCGATATGCTCCTCACTTGCCTGTTGTTTTACGAGGCCTTACTTGCACTTTTACTGCTGGATCAAAAACTGGTATTGTGGGAAGAACAGGAAGTGGAAAAACAACTCTAGTGCAAACACTTTTCCGACTTGTTGAACCTGTTGCAGGACAAATATTGATAGATAGCATTAACATCACTTCGATTGGAATTCATGATTTGCGGTCTAGACTAAGCATTATTCCTCAAGAGCCAACAATGTTTGAAGGGACTGTAAGAAGCAACCTGGATCCACTGGAAGAGTACACAGATGAACAGATTTGGCAGGCTTTAGAGATGTGCCAACTTGGAGATGAAGTAAGGAAAAAAGAAGGGAGACTTGACTCCATAGTGACTGAAAATGGAGAAAATTGGAGCATGGGTCAAAGGCAGTTGGTCTGCCTAGGCCGTGTTCTACTGAAGAAAAGCAAGATCTTGGTGCTTGATGAAGCTACTGCATCTGTTGATACAGCCACGGATAATATTATTCAGCAAACAGTTAAGCATCATTTTGCAGAATGCACAGTCCTCACCATTGCTCATAGGATAACTTCAATCATTGACAGTGACATGGTTCTGTTTTTAAATCAAGGATTGATTGAAGAATATGATTCACCAAAGAAACTGCTTAAGAACAAATCTTCATCTCTTGCTCTACTGGTTGCTGAATACACAAGGAGATCAGATTCTGGTTTTGGAAATTAA 3897 0.3929 MAKLSPLEETLLNGDSSKTKGNENLTQNSNAGFFNILTFSWISPLITVGNERTLNHEDIPRLGTGDSAYGIFQTLRSKLESECGSVRNVTSLKLAKVLFLSTWQGIFLSGLFEFLSTCASYVGPFLIDILVQYLNGEHMFKNEGYVLTAAFVAAKLLESLADRHCMFRFQQAGVQIQSKLVAMIYAKGLTLSCQSMEVHSTGEIINLMTVDASRIGEFCWYMHRPWMCVLQVALALLILYRSVGVASIAALGATVIVMLLNHPVASLQEKFQGKVMESKDKRMKATSEILKNMRILKLQAWEIKFLSKIIQLRKTEEIWLKKFLAGSAVVRFVFNSAPTFIAMVTFGTCVLVGIPLESGKVLSALATFRILQMPIYALPDTITMIAQSRISLERIASFLRLEELQTDVVEKLPWGSSDKAVELVDGNFSWDLSSSNPTLKNINLTVFHGTRVAVCGTVGSGKSSLLSCIIGEVPKISGSLKICGTKAYVSQSPWIQSGKIEENILFGKEMDREKYERVLEACSLKKDLEILPFGDQTIVGEKGINLSGGQKQRVQIARAIYQDADIYLFDDPFSAVDAHTGSHLFKECLLDLLKSKTVIYVTHQVEFLPDADLILVMREGRITQSGKFNDILRSGTDFMELVDAHRAALSSSIKSLERRPTFKQPSSTKENKNSLTDFEYEENEENIHDKKDNKDDRNESKGQLVQEEEREKGIVGFNVYWKYITTAYGGALVPFILLAQILTVGFQIASNYWMTVATPVSGTAEPDIGSLTLMLVYVALAIGSSIFTLARAFIAVIAGYKTATVLFNKMHFCVFRAPISFFDATPSGRILNRASTDQSELDMSIPSLVWAVTLNLTQILGNIVIISQAVWQIFIVLIPVMAACIWYQRYYSASARELARLVGTCQAPVIQHFSETISGSTTIKCFEQESRFNDINMKLIDRYSQPKLYSAAAIEWLNFRLDILSTLTFAFCLVFLISFPNSFTAPGIAGLAVTYGLNLNSLQTNIIWFLCTLENKIISVERILQYTSLPSEAPLVIKDNQPEYYWPSFGEVHIRDLQVRYAPHLPVVLRGLTCTFTAGSKTGIVGRTGSGKTTLVQTLFRLVEPVAGQILIDSINITSIGIHDLRSRLSIIPQEPTMFEGTVRSNLDPLEEYTDEQIWQALEMCQLGDEVRKKEGRLDSIVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKHHFAECTVLTIAHRITSIIDSDMVLFLNQGLIEEYDSPKKLLKNKSSSLALLVAEYTRRSDSGFGN* 1299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0261 1298 CDD ABC_6TM_ABCC_D1 108 395 IPR044746 GO:0140359
Vra10g0261 1298 SUPERFAMILY ABC transporter transmembrane region 733 1034 IPR036640 GO:0005524|GO:0016021
Vra10g0261 1298 CDD ABCC_MRP_domain1 421 621 - -
Vra10g0261 1298 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 107 387 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra10g0261 1298 MobiDBLite consensus disorder prediction 658 705 - -
Vra10g0261 1298 Pfam ABC transporter transmembrane region 735 977 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra10g0261 1298 Pfam ABC transporter transmembrane region 106 374 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra10g0261 1298 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 421 644 IPR003439 GO:0005524
Vra10g0261 1298 SMART AAA_5 448 621 IPR003593 -
Vra10g0261 1298 SMART AAA_5 1078 1263 IPR003593 -
Vra10g0261 1298 Gene3D - 403 661 IPR027417 -
Vra10g0261 1298 CDD ABCC_MRP_domain2 1050 1270 - -
Vra10g0261 1298 Gene3D - 1035 1286 IPR027417 -
Vra10g0261 1298 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 418 643 IPR027417 -
Vra10g0261 1298 ProSitePatterns ABC transporters family signature. 546 560 IPR017871 GO:0005524
Vra10g0261 1298 MobiDBLite consensus disorder prediction 10 24 - -
Vra10g0261 1298 MobiDBLite consensus disorder prediction 674 705 - -
Vra10g0261 1298 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1041 1278 IPR027417 -
Vra10g0261 1298 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 5 1298 - -
Vra10g0261 1298 MobiDBLite consensus disorder prediction 658 673 - -
Vra10g0261 1298 Gene3D ABC transporter type 1, transmembrane domain 82 402 IPR036640 GO:0005524|GO:0016021
Vra10g0261 1298 Gene3D ABC transporter type 1, transmembrane domain 694 1033 IPR036640 GO:0005524|GO:0016021
Vra10g0261 1298 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 735 1015 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra10g0261 1298 MobiDBLite consensus disorder prediction 1 24 - -
Vra10g0261 1298 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 5 1298 - -
Vra10g0261 1298 Pfam ABC transporter 439 573 IPR003439 GO:0005524
Vra10g0261 1298 Pfam ABC transporter 1070 1217 IPR003439 GO:0005524
Vra10g0261 1298 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1052 1286 IPR003439 GO:0005524
Vra10g0261 1298 CDD ABC_6TM_ABCC_D2 733 1027 IPR044726 GO:0140359
Vra10g0261 1298 SUPERFAMILY ABC transporter transmembrane region 103 403 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0261 Vra-Chr10 6947846 6953921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0261 421 674 Calmodulin-binding Proteins AT2G36910 30.657 2.01e-26 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0261 - K05666 gmx:106794105 2183.68