Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0258 ATGGGTATCTCTCGTGATTCCATGCACAAGAGGCGTGCCACTGGTGGTAAGAAGAAAGCTTGGAGAAAGAAGAGAAAGTACGAGCTTGGGAGGCAGCCAGCAAACACAAAGCTGTCAAGCAACAAGACAATTAGGAGGATTAGAGTTCGTGGTGGGAATGTGAAGTGGCGTGCTTTGAGGCTTGATACTGGGAACTATTCTTGGGGGAGTGAGGCTGTTACTCGCAAAACAAGGGTTCTTGATGTGGTTTACAATGCATCCAACAATGAGCTTGTTCGGACTCAGACGTTGGTCAAGAGCGCCATTGTTCAGGTCGACGCAGCGCCCTTCAAGCAGTGGTATCTGCAGCATTATGGCGTTGACATTGGTCGCAAGAAGAAGATTGCAGCTTCTGCCAAGAAGGAAGGAGAGGATGGTGAAGCTGCGACCGAAGTGGTGAAGAAGAGTAACCATGTCTTGAGAAAATTGGAAAAGCGGAAACAGACCCGGGTGCTTGATTCTCACATTGAAGAACAATTTGGGGGTGGTCGCCTTTTGGCTTGTATCTCATCCCGACCTGGCCAATGTGGCCGTGCTGATGGATATATATTAGAGGGCAAAGAGCTGGAATTTTACATGAAGAAGCTTCAAAAGAAGAAGGGCAAGGGCGCTGCATAA 657 0.484 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTIRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRVLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKIAASAKKEGEDGEAATEVVKKSNHVLRKLEKRKQTRVLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAA* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0258 218 MobiDBLite consensus disorder prediction 1 40 - -
Vra10g0258 218 Gene3D - 161 213 - -
Vra10g0258 218 TIGRFAM eS8: ribosomal protein eS8 1 199 IPR001047 GO:0003735|GO:0005840|GO:0006412
Vra10g0258 218 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Vra10g0258 218 MobiDBLite consensus disorder prediction 11 26 - -
Vra10g0258 218 PANTHER 40S RIBOSOMAL PROTEIN S8 1 218 - -
Vra10g0258 218 PANTHER 40S RIBOSOMAL PROTEIN S8 1 218 IPR001047 GO:0003735|GO:0005840|GO:0006412
Vra10g0258 218 CDD Ribosomal_S8e_like 5 197 - -
Vra10g0258 218 Gene3D - 32 160 - -
Vra10g0258 218 Pfam Ribosomal protein S8e 5 197 IPR022309 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0258 Vra-Chr10 6929425 6931914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0258 1 206 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 84.541 3.36e-126 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0258 K02995 - gmx:100527325 387.497