Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0251 ATGGAGAATATGAATAGATCTTTGGATGATATTGAATTTGATGAACAACATGACAAAGCTGCAGAAGAATTAAATGAAAACCATGTTCAACCTAACTCAATCCCTCCAACAGTTGGAATGGTTTTTGAAAGTGTTAATCAAGCCAAGTCATTTTATAGACAATATGCAATATCAAAGGGTTTTGGAATTCGAACAAGGAGTTCAAGGAAGAACAGCAAAAACGAATTATGTTACTTCATGATGGTGTGTTCTAGGGCTGGAAAATATGTCGCCTCCAATCAGAATGAAATGATTGGACGTCCAACAATGGCTAATGATTGTGCAGCTCGAATGATTGTATCAAAAAGAGAGGAGAAGTGGTACATTTCAGCATTTGATGATGTACATAATCATGATCTTAGTCCAACAAAGTCAAGATTGTTCCGAGGCAATAAAAGGATGAATCTGAACGTCAAAAGAACATTAGACTTAAATGTCGAAGGAGGAGTTAGGATTAACAAGAGTTTTCGATCCTTGGTTTGTGCTACAGGAGGTTATGAGAACATGGAGTTTGTCGAACAAGATGTTAGAAATTATGTCGCCAAACAAAGAAGAGCATTATCAAAAGATGGTGATGTCAAGGCACTCTTAAACCATTTCTCTTCCATGAGAGAATTGAATAAGGATTTCTTTTTCGACATTGATGTTGATGACGACAATCGCATACTGAACGTGTTTTGGGCTGATGCACGAAGTAGGGCAGCTTGTGAGTATTTTGGTGATGTCATATATTTTGACACAACATACTTAACTAATAAGTATGACATGCCATTTGCTCCTTTCATTGGTGTCAACCACCATGGCCAATCAATATTATTAGGTTGTGGTTTGTTATGTTCAGAGGACACAGATTCATTTGTTTGGCTATTTAATTCATGGCTTCGGTGCATGTCCAACAGAGCACCCCAAGGAATTGTTACCGATCAATGCAAAGCAATGAAGAAAGCAATAGAACTCGTGTTTCCAAACACTCGTCATAGGTGGTGCTTGTGGCATATAATGAAAAAAATACCTGAGAAGTTACAAGGTTATGCCGCTTACAAAGATATCAAGCGACAACTTAAGCAAGTTGTGTACAATTCTGATTCAGTTGACAGTTTTGTTTATGGATGGGAAAGGATGATAACAATATTTTCACTACAAACAAATGAATGGCTTTCTTCACTTTATGAAGAACGAAGTAGGTGGGTTCCTTGTTACCTGAGAAACCATTTTTGGGCTGGCATGTCAACCACTCAAAGAAGTGAGAGTATGAATGCATTTTTTGATGGATATATTAACTCACAAACTACTCTTCAAGAATTTGTTAAACAATATGACAATGCACTACAACACAAGACAGAAAAAGAAACCCAAGCTGACTTCACATCCTTAAACACAACTCTTCCATGCGGGTCACAATCACTCATAGAGCGACAATTCCAAAAGCATTACACACATGCTAAGTTTGCAGAAATACAGTCAGAATTTAGAGGTAAAATTAATTGTTTTGTTGACGGTGTTGTTGTAGAAGATAAATCATCATATTACAAGGTGACGGAGGACTCCATTCATAATGAGATAAGGGAAGAAAGGGTATTCAAGGTTACATTTGAACGAGACACAATGAATGTCACTTGCAGTTGTTTGCTTTTTGAGTTTAGGGGCATTATTTGTAGACATTGTGTATGTGTCCTAGCACAAGAGCGAGTAACACAACTTCCTGCTAAGTATATACTCACAAGATGGTGTAAAAATGTCCGCAGAAAACACACGTATATTAGAGCAACATACAACAACAAAGAAAATGATCCACATATTGAACGGTATGATAACTTATGCAAGACTTTTGCAGATATTGCTGAGATTGCGTGTGAGTCAATAAACATGACAAAATTATTGGTTGACAACCTTAGATCATTTGTGGACCAGAATGGCCTACAAATTTCACCTTCACCTTACGTCAACAACAATACTCACAAAGAACAACAACACCTGCATCATGGTAACATAGGTCATGATGTAGAAACAAATACAAACAATGTTGACATCGAAAGCCTTAAAGTTGTGAAGCGAAAGGGTCGACCTAGGACAAAAAGGTTGAAATCCACATCTGAAAGACTAACAAGGAAGAAACAATCAGCAAAACGAAGTTGTCCAACATCTGTTCATATTGCTGACACCATGATGGACGAACCGAATACAACATTCAACAATAACATTGATGGGACACTAAACACAGATTACACAACAACCAACTCAATTGGACCGGTACCAACTGTGCAATCCCCTGAGTTCATGTCACTGCTTGCATCATTACACAATGACATGCAAAACACGTAA 2361 0.3744 MENMNRSLDDIEFDEQHDKAAEELNENHVQPNSIPPTVGMVFESVNQAKSFYRQYAISKGFGIRTRSSRKNSKNELCYFMMVCSRAGKYVASNQNEMIGRPTMANDCAARMIVSKREEKWYISAFDDVHNHDLSPTKSRLFRGNKRMNLNVKRTLDLNVEGGVRINKSFRSLVCATGGYENMEFVEQDVRNYVAKQRRALSKDGDVKALLNHFSSMRELNKDFFFDIDVDDDNRILNVFWADARSRAACEYFGDVIYFDTTYLTNKYDMPFAPFIGVNHHGQSILLGCGLLCSEDTDSFVWLFNSWLRCMSNRAPQGIVTDQCKAMKKAIELVFPNTRHRWCLWHIMKKIPEKLQGYAAYKDIKRQLKQVVYNSDSVDSFVYGWERMITIFSLQTNEWLSSLYEERSRWVPCYLRNHFWAGMSTTQRSESMNAFFDGYINSQTTLQEFVKQYDNALQHKTEKETQADFTSLNTTLPCGSQSLIERQFQKHYTHAKFAEIQSEFRGKINCFVDGVVVEDKSSYYKVTEDSIHNEIREERVFKVTFERDTMNVTCSCLLFEFRGIICRHCVCVLAQERVTQLPAKYILTRWCKNVRRKHTYIRATYNNKENDPHIERYDNLCKTFADIAEIACESINMTKLLVDNLRSFVDQNGLQISPSPYVNNNTHKEQQHLHHGNIGHDVETNTNNVDIESLKVVKRKGRPRTKRLKSTSERLTRKKQSAKRSCPTSVHIADTMMDEPNTTFNNNIDGTLNTDYTTTNSIGPVPTVQSPEFMSLLASLHNDMQNT* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0251 786 Pfam MULE transposase domain 255 349 IPR018289 -
Vra10g0251 786 Pfam SWIM zinc finger 549 571 IPR007527 GO:0008270
Vra10g0251 786 ProSiteProfiles Zinc finger SWIM-type profile. 540 576 IPR007527 GO:0008270
Vra10g0251 786 MobiDBLite consensus disorder prediction 701 727 - -
Vra10g0251 786 SMART 26again6 551 578 IPR006564 GO:0008270
Vra10g0251 786 PANTHER OS03G0843700 PROTEIN 19 621 - -
Vra10g0251 786 Pfam FAR1 DNA-binding domain 50 134 IPR004330 -
Vra10g0251 786 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 19 621 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0251 Vra-Chr10 6827684 6832711 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra10g0251 MULE 5.5e-34 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0251 - - var:108332824 1377.07