Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0247 ATGGTACCACTGAGTCTGATCTCTGAATGTACCAAGAATTTGGCTAGTGAACATGCAGAAGTAGTGCCTATTTCACTTTTTGTGGCTGTTCTCTGCCTTTGCTTGGTCATTGGTCACTTGCTTGAAGAAAATCGATGGATTAATGAATCCATAGTTGCCATCATAATTGGAATCATTGCTGGAATTATACTGTTATTGATCACCAAAGGAAAGAGTTCTCACATACTTACATTTAATGAAGAACTATTCTTCATATATCTCCTTCCTCCCATAATATTCAATGCAGGATTTCAGGTGAAGAAGAAACAATTCTTCCATAACTTTTTTACCATCATGATGTTTGGTGTCATCGGTGTTTTCATTTCAACTTTTGTTATTACTTGCGGCAGCTGGTGGATATTCCCCAAGTTGAACTTGCTTGGTCTGACAGGGAAAGATTATCTTGCTATAGGAACAATTTTCTCAGCAACGGACACAGTTTGTACCCTGCAGGTTCTGCATCAAGATGATACTCCTTTACTTTACAGCCTAGTCTTTGGGGAAGGAGTGGTAAATGATGCCACATCAGTTGTTCTCTTCAATGCAGTGCAAAAGCTTGATGTTTCAAAATTTAGCAGCAACACATTCCGGTTTATTGGAGATTTCTTCTATCTATTCGGATTAAGCACCAGTCTAGGAGTTCTAGCTGGCCTCCTCACATCATATATCTTGAAAGCCTTATGCTTTGGAAGACATTCAAGTGTTCGTGAAATTGCAGTGATGATATTAATGGCATACCTATCCTATATGTTGGCAGAGCTATGTGATCTAAGTGGAATCATCACCGTTTTCTTTTGTGGAATACTCATGTCACATTATGCATGGTATAATGTGACTGAAACTTCAAGAATCACAACCAGGCATGTGTTTGCAACAATGTCATTTATTGCAGAAACCTTCATATTCCTATATGTGGGCATGGATGCCCTTGACATTGAGAAGTGGAAGATGACTAAATTAAGTTACGGAAGTCTGCTGGGGATATACAGTTCCTTAATCCTATTGATATTAGTTGGGCGTGCTGCATTTGTTTTCCCTCTCTCTGCTATTGCCAATTATACGAACACACGTGCTAGTTCTGACCAAGCATCCCGCATCACTTTCAGACAGCAGATAATCGTTTGGTGGGCAGGGCTAATGAGGGGAGCTGTCTCCATTGCTCTGGCTTTCAAACAGTTCACATTTTCTGGAGTTACTTCTGATCCAGTTAAAGCAACAATGATTACCAACACCATTATTGTTGTCCTTTTCAGCACACTGGTGTTTGGTTTTCTCACAAAACCATTAATAAGATATCTGCTACCCCACGCTGCTACAAGGAAAAACATCGTCCACGAAGAATCGGGTACACAAATTGAGGACTTGAATCTACCTTTGCTCTCCCTTGAGGAGTCCGCAGCCACCAACATCAGCCGCGCAAAGGAAAGTTTGTCCATGTTAATAGAAAGTCCTGTGTTCACCATACATCACTATTGGAGGAGGTTTGATGATGCCTACATGAGACCTTTCTTTGGGGGACCTCATCATAACGGGTCACAGTGCTAG 1584 0.4085 MVPLSLISECTKNLASEHAEVVPISLFVAVLCLCLVIGHLLEENRWINESIVAIIIGIIAGIILLLITKGKSSHILTFNEELFFIYLLPPIIFNAGFQVKKKQFFHNFFTIMMFGVIGVFISTFVITCGSWWIFPKLNLLGLTGKDYLAIGTIFSATDTVCTLQVLHQDDTPLLYSLVFGEGVVNDATSVVLFNAVQKLDVSKFSSNTFRFIGDFFYLFGLSTSLGVLAGLLTSYILKALCFGRHSSVREIAVMILMAYLSYMLAELCDLSGIITVFFCGILMSHYAWYNVTETSRITTRHVFATMSFIAETFIFLYVGMDALDIEKWKMTKLSYGSLLGIYSSLILLILVGRAAFVFPLSAIANYTNTRASSDQASRITFRQQIIVWWAGLMRGAVSIALAFKQFTFSGVTSDPVKATMITNTIIVVLFSTLVFGFLTKPLIRYLLPHAATRKNIVHEESGTQIEDLNLPLLSLEESAATNISRAKESLSMLIESPVFTIHHYWRRFDDAYMRPFFGGPHHNGSQC* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0247 527 Gene3D - 143 195 - -
Vra10g0247 527 PANTHER SODIUM/HYDROGEN EXCHANGER 7 523 - -
Vra10g0247 527 Pfam Sodium/hydrogen exchanger family 28 443 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Vra10g0247 527 PANTHER SODIUM/HYDROGEN EXCHANGER 7 523 IPR018422 GO:0006812|GO:0015299|GO:0016021
Vra10g0247 527 PRINTS Na+/H+ exchanger signature 82 93 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vra10g0247 527 PRINTS Na+/H+ exchanger signature 96 110 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vra10g0247 527 PRINTS Na+/H+ exchanger signature 111 119 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vra10g0247 527 PRINTS Na+/H+ exchanger signature 151 161 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0247 Vra-Chr10 6787268 6796888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0247 11 527 Antiporters AT5G55470 68.199 0.0 742
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0247 - - gmx:100813332 880.552