Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0244 ATGGCATCTTCAGATGATGAGGGAGAGTCTCAGCCACTATCTGTGGCAAATTACTATTTTGAAGATGACAAAGATGTGCCGGTGTGTTTTTCCGTGTTACCAATTGTGTGGAGTGAGTCAGAGAGTCCAGTTAGCAAGAAAGTACAGGTGTTTTTGCGTGGTTTTGCAGATAATGGGCTGCAGAAGATTTTCATGCAAGTTGTTGCGTGGAGGTTTGATCTTTCCTATGTGAGGCCTGAGATATCGGTGTTGTCAAAGGATGGGAGATGGATTAAACTTGAAAAGCCTAGGAAGAGCTATGAGGAAACCATAAGATCTATTTTGATCACCATTCACTTCATGGGTTATGTGAAGAGGAATCCTGACTCATCTGCCAAGTCCGCGTGGGATAGCTTGAGTAAGAATAAGGAGTTTAGATCTTATGAGGTTATGCCTTCGCAAAATGATATATTAAATCATATGACTTTAATGGGTGAAGCTGCCAAAAGAGATGCTGGCTTAGCAAAGTCCAAGCTTTTCCTCATGGTTCGGGAAGATAAACATAGGCTGAAGATTAAGAAACTTTCTGATGAGGAAATTAAAGATTTAGCACGACCTGGATTTATAACTGATGATACTGACAATGATTTGATTGATGAAATTGATGAAGATTCAGATGGGGAGGATGGGTTGTTTGATTCTGTTTGTGCGATTTGTGACAATGGTGGTGAACTTTTGTGTTGTGATGGAAAGTGCATGAGGTCATTTCATGCTAATGAGGAGGATGGTGAAGAATCTGCTTGTGCCTCTCTTGGTTTTAGCCAGAAGCAAGTTGATGATATCCAGAACTTCTACTGTAAGAATTGTGAATATAATCAACATCAGTGCTTTGCATGTGGTACTCTAGGCTGCTCTGATAAATTTTCTGGTGCTGAGGTCTTCAAATGTGCGTCTGCAACCTGTGGTTTCTTTTATCATCCACAATGTGTTGCAAAGTTACTTCACCGGGTAGTTGAGGAGGCTCCAGATCCGAAGGAACTTGAGAGAAATATTGCTGAAGGAGGAGCTTTTACTTGTCCTACTCATTACTGTTGTGTCTGTAAAGGAATGGAAGACAAAAATGAACATGATTTTCACTTTGCTGTTTGTAGGCGTTGCCCCAAGTCCTACCATCGCAAATGCTTGCCAAGGAAGATTGCATTTGATGACATAGAGGATGAAGATATTGTAACAAGGGCTTGGGAAGACCTTCTACCCAACAATCGCATTCTTATATATTGTTTAAAACATGAGATTGATGATGAATATGGGACTCCTGTAAGGGATCATATAAAGTTTCCCAATGTAAAAGCTTCGGTTCAAGAAGTTAATGATGAGGACAATGAAAAGCCTGCAAACAAAGAGAGGGTTATATTGGACAAGAACAGCATTGTCTCTGAAAGTTTAATTGGCAAAAAGGCTGCTTTGAAATTTTCTAATAAACTGCCTGGTAAAATGTCTTCTGGAAAAGTGGTTGACAAGAAGTCTGAAAAGATTTCTGGATCAAATATCTCAAGGAAGAAAACAAATGAGGCATCAAGAAGGGGTTTGAATGAAAGTAAGAGGCCATTAGTCCCAAAGGAAACCAGAAAGTCTGAGGGTGCAGAAAATAAGTCCTCATTGGGTGCAAAGTTATTTGCCTATTGGAATAATAGTTCTGAGCAAATTAATTCTGGTAATAAGGTTAATAGTGTAGCTAATAATTCCCGGCATGTTAAGCCTACTAAAAAGCTGAGTAGTGCATTACCCTCATTAGATGAAGATGCAGAGAGGAGATTGGTAGCTATGTTTAAAGAAGCTACTTCATCAGTTACTTTGGAGGATGTTGTAAAAGAGCACAATTTTGTTAGTACTCATACCCACTCATTGAAAAATGTTGTGGAGAAAACCATTACGTTGGGGAAATTGGAAGGCTCAGTTGAGGCTGTTCGAACAGCTCTAAGGATGCTAGAGGGTGGGCACAATGTTCGGGATGCTGCAGCTGTTTGTGGTCCTGATGTTCTTAACCAAATATTTAAGTGGAAGGATAAGCTGAAAGTATATCTTGCACCTGTTCTATATGGTAATCGGTACACATCGTTTGGCCGCCATTTTACACAAATTGAAAAGCTGGAAGGGATTGTTGATAAACTGCATTGGTATGTTCAGAATGGTGATACAATTGTGGACTTCTGTTGTGGTGCTAATGACTTCAGCATTCTTATGAAGAAAAAGCTTGAAGAGACTGGAAAGCGATGCTCATACAAAAACTTTGATCTACTTCCAACGAAGAATGATTTTAATTTTGAGATGCGAGATTGGATGACTGTACAAACAAAGGAGTTGCCTACAGGGTCAAAGTTGATCATGGGCTTAAATCCCCCCTTTGGACTAAAGGCAGCATTGGCTAACAAGTTTATAGACAAAGCTCTTGAGTTCAGACCGAAGCTCATGATTCTCATTGTACCATCAGAGACACAGAGGCTAGATGAGAAACGGCGTCCGTATGATCTTGTCTGGGAGGATGATAGGTTTCTATCGGGCAAGTCGTTTTATCTACCTGGATCAGTTGATGCTAATGACAGGCAAATAGAGCAGTGGAATGTAAAGCCACCCCCACTGTACCTTTGGAGTCGTCCTGATTGGACAAGCAAGCACAAGGCCATAGCTCGGGAGCATGATCACCTGATCAGCCAGCGTGACGTGTCACCTTCCAGTCATACTAAGGAAGATAATTCTGTTGTGAATATCAAGCAAGGTGATGACATCTTGAATTCAATTGATGCACCTATCAATGAAGGTCAGGTGGGATACTCACCACATGGAAGTGTTGATCGAGGGAGTCAAGAGAGACAGGAATATAGGGTGAGCGATGCTGAGAATACCACACGGAAGAGGAAACGCCGTGAGGAAAATGATGAAAGAGGACTAGGTGTGACCTCACCAGTCAATCCAATTGATATGAGATCCTCAAGTGAACGTTTTCAGCCTAAACATGACATGCCAGCTCCAGATTTTGAGGTTGTTGATAAAGGTTATAGGAATTTGGAGCCTACCTCTTCCTCACATACCGGGGGGATTAGAGGAGCCTATAGCGGGACCGAATATTGGCCAAGTGTTTCCAATCCCCTTTATGATTCTGGGATTACAGGCGTAGATGGACGCCATGACAGCCTTATGAGAGACACCGGATATAGACCCTATGTCAGGGAGGATGAGAGCAACCTTAGGGAACTAGGGACAAGGCAACATATTCGCCAATACGGGCTTCAGAATCCTAATAATGTGACTGCTAATTATCTATCATCTGTTCACGATCCTGCTTATAGCTACCATGAGGGATTAAGTTATCCAGCCCATGGCTCATCATATGAGTCTCCTTATGCCATGAATGCACCAGCCATGCAGCGATATGCACCTCGTCTGGACGAATTAAACCATGTAAGGATGAATCCTCTGGGGTCTGAGCCTCCTCCTATAGTTGGACGTAGTGTGCCCCAACCTGGATATGGGAATCGGATGCCAGGTTTTGGAGGCGGTTCTCACCATCTCAATTCACGCCAGAATTCAGCAGACCGGTTCAACCAGTAG 3588 0.4217 MASSDDEGESQPLSVANYYFEDDKDVPVCFSVLPIVWSESESPVSKKVQVFLRGFADNGLQKIFMQVVAWRFDLSYVRPEISVLSKDGRWIKLEKPRKSYEETIRSILITIHFMGYVKRNPDSSAKSAWDSLSKNKEFRSYEVMPSQNDILNHMTLMGEAAKRDAGLAKSKLFLMVREDKHRLKIKKLSDEEIKDLARPGFITDDTDNDLIDEIDEDSDGEDGLFDSVCAICDNGGELLCCDGKCMRSFHANEEDGEESACASLGFSQKQVDDIQNFYCKNCEYNQHQCFACGTLGCSDKFSGAEVFKCASATCGFFYHPQCVAKLLHRVVEEAPDPKELERNIAEGGAFTCPTHYCCVCKGMEDKNEHDFHFAVCRRCPKSYHRKCLPRKIAFDDIEDEDIVTRAWEDLLPNNRILIYCLKHEIDDEYGTPVRDHIKFPNVKASVQEVNDEDNEKPANKERVILDKNSIVSESLIGKKAALKFSNKLPGKMSSGKVVDKKSEKISGSNISRKKTNEASRRGLNESKRPLVPKETRKSEGAENKSSLGAKLFAYWNNSSEQINSGNKVNSVANNSRHVKPTKKLSSALPSLDEDAERRLVAMFKEATSSVTLEDVVKEHNFVSTHTHSLKNVVEKTITLGKLEGSVEAVRTALRMLEGGHNVRDAAAVCGPDVLNQIFKWKDKLKVYLAPVLYGNRYTSFGRHFTQIEKLEGIVDKLHWYVQNGDTIVDFCCGANDFSILMKKKLEETGKRCSYKNFDLLPTKNDFNFEMRDWMTVQTKELPTGSKLIMGLNPPFGLKAALANKFIDKALEFRPKLMILIVPSETQRLDEKRRPYDLVWEDDRFLSGKSFYLPGSVDANDRQIEQWNVKPPPLYLWSRPDWTSKHKAIAREHDHLISQRDVSPSSHTKEDNSVVNIKQGDDILNSIDAPINEGQVGYSPHGSVDRGSQERQEYRVSDAENTTRKRKRREENDERGLGVTSPVNPIDMRSSSERFQPKHDMPAPDFEVVDKGYRNLEPTSSSHTGGIRGAYSGTEYWPSVSNPLYDSGITGVDGRHDSLMRDTGYRPYVREDESNLRELGTRQHIRQYGLQNPNNVTANYLSSVHDPAYSYHEGLSYPAHGSSYESPYAMNAPAMQRYAPRLDELNHVRMNPLGSEPPPIVGRSVPQPGYGNRMPGFGGGSHHLNSRQNSADRFNQ* 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0244 1195 Pfam Cytosine specific DNA methyltransferase replication foci domain 15 133 IPR022702 -
Vra10g0244 1195 MobiDBLite consensus disorder prediction 895 1002 - -
Vra10g0244 1195 MobiDBLite consensus disorder prediction 945 975 - -
Vra10g0244 1195 PANTHER ENHANCED DOWNY MILDEW PROTEIN 1 1190 - -
Vra10g0244 1195 MobiDBLite consensus disorder prediction 491 543 - -
Vra10g0244 1195 CDD PHD2_NSD 288 355 - -
Vra10g0244 1195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 377 IPR013083 -
Vra10g0244 1195 MobiDBLite consensus disorder prediction 494 543 - -
Vra10g0244 1195 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 1 1190 - -
Vra10g0244 1195 SMART PHD_3 228 283 IPR001965 -
Vra10g0244 1195 SMART PHD_3 357 424 IPR001965 -
Vra10g0244 1195 SMART PHD_3 288 356 IPR001965 -
Vra10g0244 1195 MobiDBLite consensus disorder prediction 1181 1195 - -
Vra10g0244 1195 MobiDBLite consensus disorder prediction 1150 1195 - -
Vra10g0244 1195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 225 285 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0244 Vra-Chr10 6745788 6761581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0244 226 329 PHD Transcription Factor Family AT3G14980 32.692 1.50e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0244 - - gmx:100803073 1912.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0244 10 6745788 6761581 Vra6g0180 6 1329411 1339296 PCT