Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra10g0244 | ATGGCATCTTCAGATGATGAGGGAGAGTCTCAGCCACTATCTGTGGCAAATTACTATTTTGAAGATGACAAAGATGTGCCGGTGTGTTTTTCCGTGTTACCAATTGTGTGGAGTGAGTCAGAGAGTCCAGTTAGCAAGAAAGTACAGGTGTTTTTGCGTGGTTTTGCAGATAATGGGCTGCAGAAGATTTTCATGCAAGTTGTTGCGTGGAGGTTTGATCTTTCCTATGTGAGGCCTGAGATATCGGTGTTGTCAAAGGATGGGAGATGGATTAAACTTGAAAAGCCTAGGAAGAGCTATGAGGAAACCATAAGATCTATTTTGATCACCATTCACTTCATGGGTTATGTGAAGAGGAATCCTGACTCATCTGCCAAGTCCGCGTGGGATAGCTTGAGTAAGAATAAGGAGTTTAGATCTTATGAGGTTATGCCTTCGCAAAATGATATATTAAATCATATGACTTTAATGGGTGAAGCTGCCAAAAGAGATGCTGGCTTAGCAAAGTCCAAGCTTTTCCTCATGGTTCGGGAAGATAAACATAGGCTGAAGATTAAGAAACTTTCTGATGAGGAAATTAAAGATTTAGCACGACCTGGATTTATAACTGATGATACTGACAATGATTTGATTGATGAAATTGATGAAGATTCAGATGGGGAGGATGGGTTGTTTGATTCTGTTTGTGCGATTTGTGACAATGGTGGTGAACTTTTGTGTTGTGATGGAAAGTGCATGAGGTCATTTCATGCTAATGAGGAGGATGGTGAAGAATCTGCTTGTGCCTCTCTTGGTTTTAGCCAGAAGCAAGTTGATGATATCCAGAACTTCTACTGTAAGAATTGTGAATATAATCAACATCAGTGCTTTGCATGTGGTACTCTAGGCTGCTCTGATAAATTTTCTGGTGCTGAGGTCTTCAAATGTGCGTCTGCAACCTGTGGTTTCTTTTATCATCCACAATGTGTTGCAAAGTTACTTCACCGGGTAGTTGAGGAGGCTCCAGATCCGAAGGAACTTGAGAGAAATATTGCTGAAGGAGGAGCTTTTACTTGTCCTACTCATTACTGTTGTGTCTGTAAAGGAATGGAAGACAAAAATGAACATGATTTTCACTTTGCTGTTTGTAGGCGTTGCCCCAAGTCCTACCATCGCAAATGCTTGCCAAGGAAGATTGCATTTGATGACATAGAGGATGAAGATATTGTAACAAGGGCTTGGGAAGACCTTCTACCCAACAATCGCATTCTTATATATTGTTTAAAACATGAGATTGATGATGAATATGGGACTCCTGTAAGGGATCATATAAAGTTTCCCAATGTAAAAGCTTCGGTTCAAGAAGTTAATGATGAGGACAATGAAAAGCCTGCAAACAAAGAGAGGGTTATATTGGACAAGAACAGCATTGTCTCTGAAAGTTTAATTGGCAAAAAGGCTGCTTTGAAATTTTCTAATAAACTGCCTGGTAAAATGTCTTCTGGAAAAGTGGTTGACAAGAAGTCTGAAAAGATTTCTGGATCAAATATCTCAAGGAAGAAAACAAATGAGGCATCAAGAAGGGGTTTGAATGAAAGTAAGAGGCCATTAGTCCCAAAGGAAACCAGAAAGTCTGAGGGTGCAGAAAATAAGTCCTCATTGGGTGCAAAGTTATTTGCCTATTGGAATAATAGTTCTGAGCAAATTAATTCTGGTAATAAGGTTAATAGTGTAGCTAATAATTCCCGGCATGTTAAGCCTACTAAAAAGCTGAGTAGTGCATTACCCTCATTAGATGAAGATGCAGAGAGGAGATTGGTAGCTATGTTTAAAGAAGCTACTTCATCAGTTACTTTGGAGGATGTTGTAAAAGAGCACAATTTTGTTAGTACTCATACCCACTCATTGAAAAATGTTGTGGAGAAAACCATTACGTTGGGGAAATTGGAAGGCTCAGTTGAGGCTGTTCGAACAGCTCTAAGGATGCTAGAGGGTGGGCACAATGTTCGGGATGCTGCAGCTGTTTGTGGTCCTGATGTTCTTAACCAAATATTTAAGTGGAAGGATAAGCTGAAAGTATATCTTGCACCTGTTCTATATGGTAATCGGTACACATCGTTTGGCCGCCATTTTACACAAATTGAAAAGCTGGAAGGGATTGTTGATAAACTGCATTGGTATGTTCAGAATGGTGATACAATTGTGGACTTCTGTTGTGGTGCTAATGACTTCAGCATTCTTATGAAGAAAAAGCTTGAAGAGACTGGAAAGCGATGCTCATACAAAAACTTTGATCTACTTCCAACGAAGAATGATTTTAATTTTGAGATGCGAGATTGGATGACTGTACAAACAAAGGAGTTGCCTACAGGGTCAAAGTTGATCATGGGCTTAAATCCCCCCTTTGGACTAAAGGCAGCATTGGCTAACAAGTTTATAGACAAAGCTCTTGAGTTCAGACCGAAGCTCATGATTCTCATTGTACCATCAGAGACACAGAGGCTAGATGAGAAACGGCGTCCGTATGATCTTGTCTGGGAGGATGATAGGTTTCTATCGGGCAAGTCGTTTTATCTACCTGGATCAGTTGATGCTAATGACAGGCAAATAGAGCAGTGGAATGTAAAGCCACCCCCACTGTACCTTTGGAGTCGTCCTGATTGGACAAGCAAGCACAAGGCCATAGCTCGGGAGCATGATCACCTGATCAGCCAGCGTGACGTGTCACCTTCCAGTCATACTAAGGAAGATAATTCTGTTGTGAATATCAAGCAAGGTGATGACATCTTGAATTCAATTGATGCACCTATCAATGAAGGTCAGGTGGGATACTCACCACATGGAAGTGTTGATCGAGGGAGTCAAGAGAGACAGGAATATAGGGTGAGCGATGCTGAGAATACCACACGGAAGAGGAAACGCCGTGAGGAAAATGATGAAAGAGGACTAGGTGTGACCTCACCAGTCAATCCAATTGATATGAGATCCTCAAGTGAACGTTTTCAGCCTAAACATGACATGCCAGCTCCAGATTTTGAGGTTGTTGATAAAGGTTATAGGAATTTGGAGCCTACCTCTTCCTCACATACCGGGGGGATTAGAGGAGCCTATAGCGGGACCGAATATTGGCCAAGTGTTTCCAATCCCCTTTATGATTCTGGGATTACAGGCGTAGATGGACGCCATGACAGCCTTATGAGAGACACCGGATATAGACCCTATGTCAGGGAGGATGAGAGCAACCTTAGGGAACTAGGGACAAGGCAACATATTCGCCAATACGGGCTTCAGAATCCTAATAATGTGACTGCTAATTATCTATCATCTGTTCACGATCCTGCTTATAGCTACCATGAGGGATTAAGTTATCCAGCCCATGGCTCATCATATGAGTCTCCTTATGCCATGAATGCACCAGCCATGCAGCGATATGCACCTCGTCTGGACGAATTAAACCATGTAAGGATGAATCCTCTGGGGTCTGAGCCTCCTCCTATAGTTGGACGTAGTGTGCCCCAACCTGGATATGGGAATCGGATGCCAGGTTTTGGAGGCGGTTCTCACCATCTCAATTCACGCCAGAATTCAGCAGACCGGTTCAACCAGTAG | 3588 | 0.4217 | MASSDDEGESQPLSVANYYFEDDKDVPVCFSVLPIVWSESESPVSKKVQVFLRGFADNGLQKIFMQVVAWRFDLSYVRPEISVLSKDGRWIKLEKPRKSYEETIRSILITIHFMGYVKRNPDSSAKSAWDSLSKNKEFRSYEVMPSQNDILNHMTLMGEAAKRDAGLAKSKLFLMVREDKHRLKIKKLSDEEIKDLARPGFITDDTDNDLIDEIDEDSDGEDGLFDSVCAICDNGGELLCCDGKCMRSFHANEEDGEESACASLGFSQKQVDDIQNFYCKNCEYNQHQCFACGTLGCSDKFSGAEVFKCASATCGFFYHPQCVAKLLHRVVEEAPDPKELERNIAEGGAFTCPTHYCCVCKGMEDKNEHDFHFAVCRRCPKSYHRKCLPRKIAFDDIEDEDIVTRAWEDLLPNNRILIYCLKHEIDDEYGTPVRDHIKFPNVKASVQEVNDEDNEKPANKERVILDKNSIVSESLIGKKAALKFSNKLPGKMSSGKVVDKKSEKISGSNISRKKTNEASRRGLNESKRPLVPKETRKSEGAENKSSLGAKLFAYWNNSSEQINSGNKVNSVANNSRHVKPTKKLSSALPSLDEDAERRLVAMFKEATSSVTLEDVVKEHNFVSTHTHSLKNVVEKTITLGKLEGSVEAVRTALRMLEGGHNVRDAAAVCGPDVLNQIFKWKDKLKVYLAPVLYGNRYTSFGRHFTQIEKLEGIVDKLHWYVQNGDTIVDFCCGANDFSILMKKKLEETGKRCSYKNFDLLPTKNDFNFEMRDWMTVQTKELPTGSKLIMGLNPPFGLKAALANKFIDKALEFRPKLMILIVPSETQRLDEKRRPYDLVWEDDRFLSGKSFYLPGSVDANDRQIEQWNVKPPPLYLWSRPDWTSKHKAIAREHDHLISQRDVSPSSHTKEDNSVVNIKQGDDILNSIDAPINEGQVGYSPHGSVDRGSQERQEYRVSDAENTTRKRKRREENDERGLGVTSPVNPIDMRSSSERFQPKHDMPAPDFEVVDKGYRNLEPTSSSHTGGIRGAYSGTEYWPSVSNPLYDSGITGVDGRHDSLMRDTGYRPYVREDESNLRELGTRQHIRQYGLQNPNNVTANYLSSVHDPAYSYHEGLSYPAHGSSYESPYAMNAPAMQRYAPRLDELNHVRMNPLGSEPPPIVGRSVPQPGYGNRMPGFGGGSHHLNSRQNSADRFNQ* | 1196 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra10g0244 | 1195 | Pfam | Cytosine specific DNA methyltransferase replication foci domain | 15 | 133 | IPR022702 | - | |
| Vra10g0244 | 1195 | MobiDBLite | consensus disorder prediction | 895 | 1002 | - | - | |
| Vra10g0244 | 1195 | MobiDBLite | consensus disorder prediction | 945 | 975 | - | - | |
| Vra10g0244 | 1195 | PANTHER | ENHANCED DOWNY MILDEW PROTEIN | 1 | 1190 | - | - | |
| Vra10g0244 | 1195 | MobiDBLite | consensus disorder prediction | 491 | 543 | - | - | |
| Vra10g0244 | 1195 | CDD | PHD2_NSD | 288 | 355 | - | - | |
| Vra10g0244 | 1195 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 286 | 377 | IPR013083 | - | |
| Vra10g0244 | 1195 | MobiDBLite | consensus disorder prediction | 494 | 543 | - | - | |
| Vra10g0244 | 1195 | PANTHER | PHD FINGER-CONTAINING PROTEIN DDB_G0268158 | 1 | 1190 | - | - | |
| Vra10g0244 | 1195 | SMART | PHD_3 | 228 | 283 | IPR001965 | - |
Showing 1 to 10 of 15 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra10g0244 | - | - | gmx:100803073 | 1912.89 |
Showing 1 to 1 of 1 entries
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vra10g0244 | 10 | 6745788 | 6761581 | Vra6g0180 | 6 | 1329411 | 1339296 | PCT |
Showing 1 to 1 of 1 entries