Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0239 ATGGCCATGCTTGCCCTCACCAACCCAACTTCTATTCGCCACAATGCATTCTCTTATTCTTCTTCTTCTTCCTCTTTCGCTCTCAGAACCAGAACGTGCGTCACCGCGCGACGTCGTTTCGCGTCCGTGAGGTGCTGCTCCTTCTCGACACCCGAGAGCGCCAAGATTAAGGTTGTCGGCGTCGGGGGCGGCGGGAACAATGCCGTTAACCGCATGATTGGTTGCGGATTGCACGGTGTAGAATTTTATGCTATAAATACCGATGCTCAAGCACTGTTGCATTCTGCTGCCGAGAACCCTATCAAAATTGGAGAGCTTCTGACTCGGGGATTAGGTACTGGGGGAAATCCACTTTTGGGGGAACAAGCTGCTGAGGAATCTAAAGATGCTATTGCTAGTGCTCTTCAAGGATCTGATTTAGTGTTTATAACTGCTGGCATGGGTGGGGGAACTGGGTCTGGTGCCGCACCAGTAGTGGCCCGAGTAGCAAAAGAGGCAGGTTACTTGACTGTAGGTGTTGTTACCTATCCCTTCAGTTTTGAAGGACGCAAAAGATCATTGCAGGCACTGGAAGCCATTGAAAAGCTGCAGAAAAATGTGGATACTCTTATAGTGATTCCAAATGACCGCCTCCTTGACATGGCTGATGAGCAGACACCTCTTCAGGATGCTTTCCGTCTGGCAGATGATGTTCTGAGGCAAGGAGTGCAGGGAATATCAGACATCATAACAATACCTGGGCTTGTAAATGTGGATTTTGCTGATGTAAAAGCTGTGATGAAAGACTCTGGAACAGCAATGCTTGGTGTGGGTGTTTCCTCCAGTAAAAATCGTGCCGAAGAAGCTGCAGAGCAGGCTACTTTGGCTCCTTTAATCGGCTCTTCTATTCAGTCAGCTACTGGAGTGGTGTATAATATTACTGGAGGAAAAGACATAACTCTGCAGGAAGTAAACAGAGTGTCTCAGGTGGTGACAAGTTTAGCTGACCCTTCTGCCAATATCATATTCGGTGCCGTTGTTGATGATCGCTACAATGGGGAGATTCATGTGACTATCATTGCAACTGGCTTCTCGCAGTCCTTCCAAAAGACACTACTAACAGATCCAAGGGCAGCAAAGTTGCTTGACAGAGTGCCTGAGGGCCAAGAAAGCAAGGCGGCTTCCTCTTCTCTCAAATCCTCCAACTATCCAACACTTGGATCTAGAGCATCCCCACGAAAGCTCTTCTTTTAG 1233 0.4818 MAMLALTNPTSIRHNAFSYSSSSSSFALRTRTCVTARRRFASVRCCSFSTPESAKIKVVGVGGGGNNAVNRMIGCGLHGVEFYAINTDAQALLHSAAENPIKIGELLTRGLGTGGNPLLGEQAAEESKDAIASALQGSDLVFITAGMGGGTGSGAAPVVARVAKEAGYLTVGVVTYPFSFEGRKRSLQALEAIEKLQKNVDTLIVIPNDRLLDMADEQTPLQDAFRLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGFSQSFQKTLLTDPRAAKLLDRVPEGQESKAASSSLKSSNYPTLGSRASPRKLFF* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0239 410 SMART Tubulin_C_4 249 366 IPR018316 -
Vra10g0239 410 ProSitePatterns FtsZ protein signature 2. 139 160 IPR020805 GO:0005525
Vra10g0239 410 CDD FtsZ_type1 71 356 IPR000158 GO:0003924|GO:0005525
Vra10g0239 410 Hamap Cell division protein FtsZ [ftsZ]. 51 400 IPR000158 GO:0003924|GO:0005525
Vra10g0239 410 Gene3D Tubulin/FtsZ, GTPase domain 47 262 IPR036525 -
Vra10g0239 410 ProSitePatterns FtsZ protein signature 1. 86 120 IPR020805 GO:0005525
Vra10g0239 410 Pfam Tubulin/FtsZ family, GTPase domain 55 215 IPR003008 GO:0005525
Vra10g0239 410 MobiDBLite consensus disorder prediction 383 401 - -
Vra10g0239 410 MobiDBLite consensus disorder prediction 378 410 - -
Vra10g0239 410 SUPERFAMILY Tubulin nucleotide-binding domain-like 54 250 IPR036525 -
Vra10g0239 410 PRINTS Cell division protein FtsZ signature 140 160 IPR003008 GO:0005525
Vra10g0239 410 PRINTS Cell division protein FtsZ signature 168 189 IPR003008 GO:0005525
Vra10g0239 410 PRINTS Cell division protein FtsZ signature 231 253 IPR003008 GO:0005525
Vra10g0239 410 PRINTS Cell division protein FtsZ signature 254 275 IPR003008 GO:0005525
Vra10g0239 410 PANTHER CELL DIVISION PROTEIN FTSZ-RELATED 16 410 IPR045061 GO:0003924|GO:0005525
Vra10g0239 410 SUPERFAMILY Tubulin C-terminal domain-like 249 364 IPR008280 -
Vra10g0239 410 Pfam FtsZ family, C-terminal domain 264 357 IPR024757 -
Vra10g0239 410 Gene3D - 263 368 IPR037103 -
Vra10g0239 410 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 148 154 IPR017975 GO:0005525|GO:0005874|GO:0007017
Vra10g0239 410 SMART Tubulin_4 55 247 IPR003008 GO:0005525
Vra10g0239 410 PANTHER CELL DIVISION FTSZ-LIKE PROTEIN 16 410 - -
Vra10g0239 410 TIGRFAM ftsZ: cell division protein FtsZ 51 365 IPR000158 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0239 Vra-Chr10 6713548 6716305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0239 135 272 PP2C-type Phosphatase Gene Family AT1G75010 28.188 8.34e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0239 K03531 - gmx:100809043 679.478