Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0235 ATGTACTGGGCTGGGGTTATCACAGTGGTCCTTCTCTGCGCTTGCTTATATCTTATAGGGTCTATCCTCACTCCCCTTCTACGGGCCAAGCCCGTCTCCAACTCCGGCTTCTCCCCTTCGCAGCTCCAAAAGCTCCCCTCCATCATCACCGTAAAAGGCCTTTTCATGGGCTTCAAATGCGCCATCTGCCTCGACGGCATCGCCACCGACCAACCCGCTCGACTGGTTTCCTGTTGCAACCACGCCTTCCATGTGGAATGCGCTGACACATGGCTCTTCAAGCACTCTACGTGCCCTCTCTGCAGAGCCAAACTCGACCTCATACTGCTTTTCTCTTGA 339 0.5487 MYWAGVITVVLLCACLYLIGSILTPLLRAKPVSNSGFSPSQLQKLPSIITVKGLFMGFKCAICLDGIATDQPARLVSCCNHAFHVECADTWLFKHSTCPLCRAKLDLILLFS* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0235 112 ProSiteProfiles Zinc finger RING-type profile. 60 102 IPR001841 -
Vra10g0235 112 SUPERFAMILY RING/U-box 49 108 - -
Vra10g0235 112 SMART ring_2 60 101 IPR001841 -
Vra10g0235 112 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 18 107 - -
Vra10g0235 112 Pfam Ring finger domain 59 102 IPR001841 -
Vra10g0235 112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 107 IPR013083 -
Vra10g0235 112 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 18 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0235 Vra-Chr10 6659222 6659560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0235 30 105 C3H Transcription Factor Family AT5G42200 44.872 3.01e-19 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0235 K19037 - gmx:100780203 126.716