LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra10g0224	ATGCTTCAAACCATGGAGCTTCCAAATCAAGCTCAAGAAGGCTCTTCTCAAAAGAAGATGGGAAGAGGGAAGATTGAAATCAAACGGATCGAGAACACCACAAATAGGCAAGTCACCTTCTGCAAACGCCGCAACGGTTTGCTGAAGAAAGCTTATGAATTGTCAGTTCTGTGTGATGCTGAAGTTGCCCTTGTTGTCTTCTCAAGCCGTGGCCGTTTGTATGAGTATGCCAACAACAGTGTTAGGGCAACTATTGAAAGGTACAAAAAGGCAAGTGCTGCTTCCACAAACGCAGAATCTGTATCTGAAGTTAATACGCAGTTTTACCAGCAAGAATCATCCAAATTGAGAAGACAAATTCGGGATATTCAGAACCTAAACAGGCACATCCTTGGGGAAGCTCTCGGTTCTCTGAGTCTTAAGGAACTGAAGAACCTCGAGGGTAGATTGGAGAAAGGATTAAGTAGGGTTAGGTCTAGAAAGCATGAAACATTGTTTGCTGATGTCGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCATAACAATTATCTGCGAGCTAAGATAGCTGAACATGAGAGAGCTCAACAACAGCAACAACAGCAGCAAACAAATATGACGCAAGGAACACTGTGTGAGTCACTTCCTTCACAATCTTATGACAGGAACTTTTTCCCTGTAAATCTCATAGGTTCTGATCAGCAATATTCACGTCAAGACCAAACTGCTCTTCAACTTGTCTGA	747	0.427	MLQTMELPNQAQEGSSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRATIERYKKASAASTNAESVSEVNTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQQQQQTNMTQGTLCESLPSQSYDRNFFPVNLIGSDQQYSRQDQTALQLV*	249

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra10g0224	248	MobiDBLite	consensus disorder prediction	1	25	-	-
	Vra10g0224	248	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	29	76	IPR002100	GO:0003677\|GO:0046983
	Vra10g0224	248	Pfam	K-box region	105	190	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Vra10g0224	248	CDD	MADS_MEF2_like	21	95	IPR033896	GO:0000977\|GO:0045944
	Vra10g0224	248	PRINTS	MADS domain signature	22	42	IPR002100	GO:0003677\|GO:0046983
	Vra10g0224	248	PRINTS	MADS domain signature	42	57	IPR002100	GO:0003677\|GO:0046983
	Vra10g0224	248	PRINTS	MADS domain signature	57	78	IPR002100	GO:0003677\|GO:0046983
	Vra10g0224	248	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	13	235	-	-
	Vra10g0224	248	SMART	madsneu2	20	79	IPR002100	GO:0003677\|GO:0046983
	Vra10g0224	248	Coils	Coil	179	206	-	-
	Vra10g0224	248	SUPERFAMILY	SRF-like	21	98	IPR036879	GO:0003677\|GO:0046983
	Vra10g0224	248	ProSitePatterns	MADS-box domain signature.	22	76	IPR002100	GO:0003677\|GO:0046983
	Vra10g0224	248	Gene3D	-	32	104	IPR036879	GO:0003677\|GO:0046983
	Vra10g0224	248	ProSiteProfiles	K-box domain profile.	106	196	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Vra10g0224	248	PANTHER	MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN	13	235	-	-
	Vra10g0224	248	ProSiteProfiles	MADS-box domain profile.	20	80	IPR002100	GO:0003677\|GO:0046983
	Vra10g0224	248	MobiDBLite	consensus disorder prediction	1	17	-	-
	Vra10g0224	248	Coils	Coil	109	129	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra10g0224	Vra-Chr10	6355669	6362304	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra10g0224	2	248	MADS-box Gene Family	AT3G58780	67.729	2.66e-120	341

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Vra10g0224		K-box	4.7e-25	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra10g0224	K09264		-	gmx:100808734	432.95

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra10g0224	10	6355669	6362304	Vra6g0283	6	2102611	2107926	PCT