Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0214 ATGGAAACTGAAAAATCTAACATTTCAAAGGCTGAAGAACTTAAAACCCTTGCCAATGAAGCTTTCAATGCTCGAAAATACTCCCAAGCCATTGATCTATATACTCAAGCAATTGAGCTAAACGGTGGAAATGCAGTTTACTATTCTAATCGTGCCTTTGCTCATCTTCGGCTTGAGGAATATGGTAGTGCAATACAAGATGCCTCAAAGGCTATTGAAATTGATCCTAAATATTCAAAGGGTTATTACAGGCGAGGTGCTGCTTATATTGGGCTGGGAAAATTCAAGGAAGCACTGAAAGATTTTCAGCAGGTCAAGAAAATGTCTCCAAATGATCCTGATGCAACAAAGAAATTGAAGGAATGTGAAAAGGCAGTTATGAAGCTTAAATTTGAAGAAGCAATTGCTGCACCTGAGTCTGAAAGGCGTTCAATAGCTGAATCGATAGATTTCCATACAATAGATGTCGAGCCACAATATTCAGGAGCAAGAATAGAGGGGGATGTTGTTACTTTGGATTTTGTGAAAAAAATGATGGAAGATTTCAAGAACCAGAAGTTCTTACATAAACGGTATGCATTCCAGATTGTATTGCAAACAAGAGAAATTTTGCAATCTTTGCCTTCGCTAGTTGACATACATGTTCCTAATGGCAAACGTTTTACTGTTTGTGGTGATGTGCATGGTCAGTTCTATGATCTTTTGAATATTTTTGAGCTTAATGGACTTCCTTCAGAAGAGAATCCGTATCTATTTAACGGTGACTTTGTGGATAGGGGATCTTTTTCATTGGAAGTTATCCTGACCTTGTTTGCTTTTAAGTGCATGTCTCCATCAGCCATATATTTAGCCAGAGGAAATCACGAGAGCAAGAGCATGAACAAGATATATGGTTTTGAGGGTGAGGTGCGCTCAAAGTTGAATGATACTTTTGTCGAACTCTTTGCGGAAGTATTCTGCTTTTTACCACTGGCTCATGTGATAAATGAGAAAGTTTTCGTAGTTCATGGAGGTCTTTTCAGTGTTGACGGGGTCAAACTCTCTGACATCCGATCAATTAATCGATTCTGTGAACCTCCTGAAGAAGGGCTGATGTGTGAAATTCTTTGGAGTGATCCACAACCTCTCCCTGGAAGGGGCCCAAGCAAGCGTGGTGTGGGCCTTTCTTTTGGTCCAGATGTTACAGAACAGTTTTTGCAGGAAAATAATTTAGATTTAGTTGTGAGATCTCACGAAGTAAAGGATGAAGGCTACGAGATTGAACATGATGGTAAACTCATAACTGTCTTTTCTGCTCCAAATTACTGTGACCAGATGGGTAACAAAGGTGCCTTTATTCGATTTGAAGCACCAGATTTGAAACCTAACATTGTCACATTCTCAGCAGTGCCACACCCTGATGTCAAACCAATGGCTTATGCAAACAACTTCCTCAGGATGTTCTCATAA 1449 0.3961 METEKSNISKAEELKTLANEAFNARKYSQAIDLYTQAIELNGGNAVYYSNRAFAHLRLEEYGSAIQDASKAIEIDPKYSKGYYRRGAAYIGLGKFKEALKDFQQVKKMSPNDPDATKKLKECEKAVMKLKFEEAIAAPESERRSIAESIDFHTIDVEPQYSGARIEGDVVTLDFVKKMMEDFKNQKFLHKRYAFQIVLQTREILQSLPSLVDIHVPNGKRFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCMSPSAIYLARGNHESKSMNKIYGFEGEVRSKLNDTFVELFAEVFCFLPLAHVINEKVFVVHGGLFSVDGVKLSDIRSINRFCEPPEEGLMCEILWSDPQPLPGRGPSKRGVGLSFGPDVTEQFLQENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIVTFSAVPHPDVKPMAYANNFLRMFS* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0214 482 CDD MPP_PP5_C 160 475 IPR041753 -
Vra10g0214 482 PIRSF PPPtase_5 1 482 - -
Vra10g0214 482 Gene3D Tetratricopeptide repeat domain 3 133 IPR011990 GO:0005515
Vra10g0214 482 PRINTS Serine/threonine phosphatase family signature 220 247 IPR006186 GO:0016787
Vra10g0214 482 PRINTS Serine/threonine phosphatase family signature 250 277 IPR006186 GO:0016787
Vra10g0214 482 PRINTS Serine/threonine phosphatase family signature 283 307 IPR006186 GO:0016787
Vra10g0214 482 PRINTS Serine/threonine phosphatase family signature 317 343 IPR006186 GO:0016787
Vra10g0214 482 PRINTS Serine/threonine phosphatase family signature 347 374 IPR006186 GO:0016787
Vra10g0214 482 PRINTS Serine/threonine phosphatase family signature 403 423 IPR006186 GO:0016787
Vra10g0214 482 PRINTS Serine/threonine phosphatase family signature 425 441 IPR006186 GO:0016787
Vra10g0214 482 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Vra10g0214 482 Pfam Calcineurin-like phosphoesterase 220 414 IPR004843 GO:0016787
Vra10g0214 482 ProSiteProfiles TPR repeat region circular profile. 79 112 - -
Vra10g0214 482 SMART tpr_5 79 112 IPR019734 GO:0005515
Vra10g0214 482 SMART tpr_5 45 78 IPR019734 GO:0005515
Vra10g0214 482 SMART tpr_5 11 44 IPR019734 GO:0005515
Vra10g0214 482 SUPERFAMILY Metallo-dependent phosphatases 168 476 IPR029052 -
Vra10g0214 482 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Vra10g0214 482 SUPERFAMILY TPR-like 7 137 IPR011990 GO:0005515
Vra10g0214 482 Pfam Tetratricopeptide repeat 17 78 - -
Vra10g0214 482 Gene3D - 134 481 IPR029052 -
Vra10g0214 482 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 10 481 - -
Vra10g0214 482 SMART pp2a_7 188 464 IPR006186 GO:0016787
Vra10g0214 482 Pfam PPP5 TPR repeat region 119 212 IPR013235 -
Vra10g0214 482 PANTHER BNAC09G39960D PROTEIN 10 481 - -
Vra10g0214 482 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Vra10g0214 482 Pfam Tetratricopeptide repeat 80 112 IPR001440 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0214 Vra-Chr10 5954230 5969136 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0214 166 404 Calmodulin-binding Proteins AT5G63870 34.155 2.15e-41 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0214 K04460 - sly:543849 875.544