Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0197 ATGTCCTCCCACCGCGCATTCCAGCTTAAACTTAATCCGTTAACAGGTAACTCTGAATGGATCGTCATTGAAGACAATGACGAGAGCTTCGCCCAGAATTTCCACAAGCCTTTCCTTGCCACGACGTCGTATTTGGACATGCTTAATGACTCCACCAGAAACGCGGCATTTCGCCAAGCCATTCAGAAAACCATCAGCAAACCTTGCCATGTCCTCGATATCGGTGCTGGAACTGGGTTGCTTTCGATGATGGCTGCACGTGCCATGGGTGACGAAGGGAAGGTCACAGCTTGTGAATCTTACCTTCCCATGGTGAAGCTGATGAAGAAGGTGTTGCGCCTTAATGGCATGGAGGGAAGAGTCAAAATCATCAACAAGCGGTCTGAGGAACTCCAAGTTGGTTTTGATATGCCTTCGCGAGCACATGTTCTTCTGGTTGAAAGCACATTCTTGTGGAAGTTGCATGATTTTCATAACAACGAGGCTACTGTATCTGATAGCATTCGGCTTACTCCTCCAGGACTTGATAGTGTGCTAGGTATCAAACGTCAGCAATATGCTATGCATGTCAATCCTTTACAGGAAGAAATAACATTGCTTTCAGAACCGTTCAAAATTTTTGAATTTGATTTTTGGAAACGGCCAGAGAGTTATGGAGAAACTGAGTTGTGTGTAAAGGCAACAAATGATGGGAGAGTTCATGTTGTGGTCTCTTGGTGGGTACTTCAACTTGATCAGGAAGGGACTATCTATTATTCCACTGCTCCAAGGTGGATAAGCTCACCGACAATTACAAGTCCTATTGGTTGGTGTGACCACTGGAAACAGTGTGTTTGGTTCGTTCCAGGCAGTGGTATTTCCATACTCCAAGGGGAAGAAATTCGTTTACTTGCTACTCATACTGAAACTAGTTTCTCATATAATTTTGATACCCTAGTACCAACTACTGAGATTTTGAACCATAGGTGCATGACAGGAGATTTTCAGCTTGTACTACCACCAGAAAGAGCTGCAATTTATGCAGATAAAGAATGGAGGCTTTCAATGTTGAAAGCAGTACAAAGCATGGGAAAAGATCGCCTGTTATGCTTGGTTGTAGATGATAGTGTCTTTTTACCACTTCTTGTAGCAAAGCTTTCCGAAGCAAGTGTAATGTCATTACTTCCTGGGTTGAGGGAAAGGGGCCTCCAATACCTGCAAGCAGTTGCCCATGCAAATGGTTTGTCACATAGTTGCATTGAAGTTCTTGAAAAAAACGTGCAACAGTTAAACATGGATGATATACATCAGAAAAAGGTTGATCTGTTAATAGCTGAACCTTTCTATGTAGGATACGATGGTATGCTGCCATGGCAGAACCTACGATTTTGGAGGGATCGTACTACACTTAATGATATACTCTCAGAAGATGCTCTGACAATTCCTAGTAAAGGAATATTAAGAGCATGCGCTATGTCTCTTCCTGATCTTTGGAAAAGTCGTTGTTGCCTGAGTAGTATTGAAGGTTTTGACCATTCAGTGGTAAATGCTACATTGGGGGCCTGCGGTCATCCACCGGAACTAGAAGAGGGTCCCTGTCTCCCTTTTTTCGTCTGGCAGTGTGGAGAATTTGATGTGCTTAGTGAGACATTTGACGTGATGGAGTTTGATTTTTCAAAACAAATATGCGAATGTCAAGGAAAATCCCAGGTTAAGTTCACCAAGAGGGGGGTATGTCATGGATTTGTATTATGGATTGACTGGGTCATGGATTTACAAAATTCTATTGTGATTTCAACTGGTCCAGATAAGAAGTACTGGAAGCAGGGAGTTAAGCTTCTTGGAACACCTAGAACAGTAGACCCTCAAAGCTTGACAGGTGTCCAACCTTGTTCTGCAGTTGTCGAAGCTTGTTTTAGCCCTTTAAAGGGGGAACTCAAAATTATACTTGATTTTTTATGA 1941 0.4276 MSSHRAFQLKLNPLTGNSEWIVIEDNDESFAQNFHKPFLATTSYLDMLNDSTRNAAFRQAIQKTISKPCHVLDIGAGTGLLSMMAARAMGDEGKVTACESYLPMVKLMKKVLRLNGMEGRVKIINKRSEELQVGFDMPSRAHVLLVESTFLWKLHDFHNNEATVSDSIRLTPPGLDSVLGIKRQQYAMHVNPLQEEITLLSEPFKIFEFDFWKRPESYGETELCVKATNDGRVHVVVSWWVLQLDQEGTIYYSTAPRWISSPTITSPIGWCDHWKQCVWFVPGSGISILQGEEIRLLATHTETSFSYNFDTLVPTTEILNHRCMTGDFQLVLPPERAAIYADKEWRLSMLKAVQSMGKDRLLCLVVDDSVFLPLLVAKLSEASVMSLLPGLRERGLQYLQAVAHANGLSHSCIEVLEKNVQQLNMDDIHQKKVDLLIAEPFYVGYDGMLPWQNLRFWRDRTTLNDILSEDALTIPSKGILRACAMSLPDLWKSRCCLSSIEGFDHSVVNATLGACGHPPELEEGPCLPFFVWQCGEFDVLSETFDVMEFDFSKQICECQGKSQVKFTKRGVCHGFVLWIDWVMDLQNSIVISTGPDKKYWKQGVKLLGTPRTVDPQSLTGVQPCSAVVEACFSPLKGELKIILDFL* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0197 646 Gene3D - 140 323 - -
Vra10g0197 646 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 7 9 147 - -
Vra10g0197 646 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 7 138 587 - -
Vra10g0197 646 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 44 324 IPR029063 -
Vra10g0197 646 Gene3D - 479 645 - -
Vra10g0197 646 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 396 616 IPR029063 -
Vra10g0197 646 Gene3D Vaccinia Virus protein VP39 329 475 IPR029063 -
Vra10g0197 646 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 138 587 IPR025799 GO:0016274|GO:0018216
Vra10g0197 646 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 9 147 IPR025799 GO:0016274|GO:0018216
Vra10g0197 646 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 316 646 IPR025799 GO:0016274|GO:0018216
Vra10g0197 646 Pfam Lysine methyltransferase 22 122 IPR019410 -
Vra10g0197 646 Gene3D Vaccinia Virus protein VP39 21 139 IPR029063 -
Vra10g0197 646 CDD AdoMet_MTases 71 174 - -
Vra10g0197 646 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 23 310 IPR025799 GO:0016274|GO:0018216
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0197 Vra-Chr10 5482891 5492839 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0197 22 147 C2H2 Transcription Factor Family AT3G12270 27.407 4.98e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0197 K11438 - gmx:100785846 1136.71