Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0168 ATGGAAGATAACAACAATGCTTCAACAACCGAAGGAAAACCAATACGATGCAAAGCTGCCGTTGCTAGAAACGCTCGTGAGCCATTGGTGATTGAAGAGATAACTGTGGCGCCACCAATGTCCAGTGAGGTGCGGATTCGTGTTATCTGTTCCTCTCTCTGCCACAGTGACGTCACTTTTCGGAACCTCCAGGTTCCTCCTGCCATTTTTCCAAGGATTCTGGGTCATGAGGCAACTGGGGTTGTGGAAAGTGTAGGGAAGGATGTAACTGAAGTTAGAAAAGGTGATGTGGTTATTACAGTTTTTCTACCAGAATGTGGGGAGTGCATAGATTGCAAATCAAGCAAGAGCAACCGTTGTTCTATTTTCCCTTTCAAGGTGTCTCCCTGGATGCCTCGACATGGTACGTCTAGATTCACTGACAAGAATGGAGAGATCATAAGCCATTTTTTGTATATTTCAAGCTTCAGTGAGTACACTGTGGTGGACATTGCCAATATTATCAAGATTGATCCAGAAATTCCTCCTGACAGGGCATGCCTTCTTGGATGTGGTGTTTCAACAGGGGTAGGTGCTGCTTGGAGAACTGCTGGTGTGGAACCAGGGTCTACAGTAGCCATATTTGGGCTGGGGTCTATTGGATTAGCAGTTGCAGAGGGAGCAAGACTTTGTGGAGCAACTAAGATTATAGGTGTTGACGTCAATCCAGAAAAATTTGAAATTGGAAAAAAGTTTGGAGTCACAGATTTTGTCCATGCCGGAGAATGTGGGGACAATCCTGTGAGCCAGGTTATCATAGAGATGACTGGTGGGGGAGCAGATTATTGCTTCGAATGTGTTGGCACGGCATCATTGGTGCATGAAGCATATGCTTCTTGTAGAAAGGGTTGGGGAAAAACAATTGTTTTAGGAGTGGACAAGCCAGGAGCCAGGATAAATCTCAGTTCCCATGAGGTCCTTCATGACGGGAAGTGTCTCATGGGATCCTTGTTTGGAGGTCTCAAACCGAAGTCTCACGTACCTATTCTCCTTAAACGTTACGTGGACAAGGAATTGCAGTTGGATGAATTTGTCACTCATGAGGTGGAGTTTAAGGACATCAACAAAGCTTTTGATTTATTGAGTACAGGAAAGTGTCTTCGATGTGTGATTTGGATGGGTAAATGA 1167 0.449 MEDNNNASTTEGKPIRCKAAVARNAREPLVIEEITVAPPMSSEVRIRVICSSLCHSDVTFRNLQVPPAIFPRILGHEATGVVESVGKDVTEVRKGDVVITVFLPECGECIDCKSSKSNRCSIFPFKVSPWMPRHGTSRFTDKNGEIISHFLYISSFSEYTVVDIANIIKIDPEIPPDRACLLGCGVSTGVGAAWRTAGVEPGSTVAIFGLGSIGLAVAEGARLCGATKIIGVDVNPEKFEIGKKFGVTDFVHAGECGDNPVSQVIIEMTGGGADYCFECVGTASLVHEAYASCRKGWGKTIVLGVDKPGARINLSSHEVLHDGKCLMGSLFGGLKPKSHVPILLKRYVDKELQLDEFVTHEVEFKDINKAFDLLSTGKCLRCVIWMGK* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0168 388 SUPERFAMILY GroES-like 10 195 IPR011032 -
Vra10g0168 388 Gene3D - 20 381 - -
Vra10g0168 388 Pfam Zinc-binding dehydrogenase 213 333 IPR013149 -
Vra10g0168 388 PANTHER ALCOHOL DEHYDROGENASE 10 385 - -
Vra10g0168 388 PANTHER ALCOHOL DEHYDROGENASE-LIKE 7 10 385 - -
Vra10g0168 388 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 174 349 IPR036291 -
Vra10g0168 388 Gene3D - 189 329 - -
Vra10g0168 388 Pfam Alcohol dehydrogenase GroES-like domain 42 170 IPR013154 -
Vra10g0168 388 SUPERFAMILY GroES-like 337 385 IPR011032 -
Vra10g0168 388 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 75 89 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0168 Vra-Chr10 4588630 4595261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0168 43 363 Monolignol Biosynthesis Gene Families AT4G37990 22.018 1.59e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0168 K00121 - gmx:100817521 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0168 10 4588630 4595261 Vra10g0168 10 4588630 4595261 ECH