Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0166 ATGGCGCACAGGTTGCTCAGAGACCACGAAGCCGACGGTTGGGAGCGCTCCGATTTTCCTATTATCTGCGAATCCTGCCTCGGCGACAGCCCATACGTTCGAATGACCAGAGCAGACTATGACAAGGAGTGCAAGATATGTACACGGCCATTCACTGTTTTCAGATGGAGACCTGGTCGAGATGCAAGATATAAGAAAAGTGAGATCTGTCAGACATGCAGCAAATTGAAAAATGTCTGTCAAGTGTGCCTTCTGGACCTTGAATACGGACTACCAGTTCAAGTTCGGGACACTGCTCTCAGTATTGATTCCAATGATGCCATTCCAAAGAGTGATGTTAATAAGGAGTATTTCGCTGAAGAGCATGACCGTAGGGCTAGAGCTGGTATAGATTATGAATCCTCTTATGGTAAAGTACGCCCAAATGATACTATCATGAAGCTTCAAAGGACAACACCATATTACAAGAGAAACCGAGCCCATATTTGCAGTTTCTATATAAGGGGTGAATGTACCAGAGGAGCTGAGTGCCCTTATCGACATGAGATGCCAGTCACTGGGGAGTTGTCTCAACAAAATATTAAAGATCGTTATTATGGAGTGAATGATCCAGTGGCTTTGAAGCTACTTGGCAAGGCAGGAGAGATGACCACTCTGGAGGCTCCTGAGGATGAGAGCATTAAAACTCTTTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGATTTGAGGGATCACTTCTATGCCCATGGAGAAATTGAATCCATCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTAACATATACAACCAGGGAAGGTGCAGAGAAAGCAGCAGAAGAACTCTGCAACAAATTGGTTATTAAGGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGACCTCAAAACCTGAGTCTGACAGTTCTGATCAAGCAAGGCAGCAGGCATCTGTTGCTCACAGTGGATTGTTGCCTCGGGCAGTTATATCACAGCAGCAGAACCAGGACCAAACCCAAGGAGTGGTTTACTATAACAATCCCCCACCAGCTCAGCAGGAAAGAAGCTACTACCCATCAATGGATCCTCAAAGAATGGGTGCTCTTATTCCATCCCAAGATGGTCCTCCTCCTGGTGGGCCTTCTGGGTCAGGGGAGAACAAGCCTGGTTTGGAAAAGCAGCAGATGCAACATTATCCCCATTCATTGATGCCTCCTCCGCCTGGCCAATATCATCATCAGTATTATCCTCCATATGGTTATATGCCTCCAGCTCCCCCTTATCACCATCATCAGTGTCCACCTCCATACAATGCTGCAGGGCCTCCATCACAGCCACCAGCAGGAAATCATCCTTATCAGCATTCTATACAGCCAGGGCCTGGACAGGCCGCAACTGCCCCCGCTGATACTGGAACATCAACTTCAGGGTCACAGCAGCAATAA 1449 0.4755 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRADYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNKEYFAEEHDRRARAGIDYESSYGKVRPNDTIMKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTTLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELCNKLVIKGLRLKLMWGRPQTSKPESDSSDQARQQASVAHSGLLPRAVISQQQNQDQTQGVVYYNNPPPAQQERSYYPSMDPQRMGALIPSQDGPPPGGPSGSGENKPGLEKQQMQHYPHSLMPPPPGQYHHQYYPPYGYMPPAPPYHHHQCPPPYNAAGPPSQPPAGNHPYQHSIQPGPGQAATAPADTGTSTSGSQQQ* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0166 482 MobiDBLite consensus disorder prediction 402 450 - -
Vra10g0166 482 MobiDBLite consensus disorder prediction 303 320 - -
Vra10g0166 482 Gene3D - 212 311 IPR012677 -
Vra10g0166 482 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Vra10g0166 482 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Vra10g0166 482 MobiDBLite consensus disorder prediction 334 360 - -
Vra10g0166 482 MobiDBLite consensus disorder prediction 334 482 - -
Vra10g0166 482 Gene3D - 148 210 - -
Vra10g0166 482 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE 1 467 - -
Vra10g0166 482 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 467 IPR039171 GO:0003723
Vra10g0166 482 CDD RRM_RBM22 227 300 - -
Vra10g0166 482 SUPERFAMILY RNA-binding domain, RBD 222 308 IPR035979 GO:0003676
Vra10g0166 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Vra10g0166 482 SMART rrm1_1 229 297 IPR000504 GO:0003723
Vra10g0166 482 MobiDBLite consensus disorder prediction 451 482 - -
Vra10g0166 482 Pfam Torus domain 145 194 IPR032297 -
Vra10g0166 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 289 IPR000504 GO:0003723
Vra10g0166 482 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Vra10g0166 482 MobiDBLite consensus disorder prediction 300 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0166 Vra-Chr10 4559557 4563952 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0166 215 289 Eukaryotic Initiation Factors Gene Family AT1G49760 33.750 9.19e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0166 K12872 - gmx:100779917 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0166 10 4559557 4563952 Vra6g0102 6 731333 735206 PCT