LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra10g0165	ATGGTTGATCAGAAAGTTATCGGTGTTGTTGCTGCATCCTCTTACTCTCCTTCAGTGGTATCTTCTAAAAGATATGATGTGTTTCTAAGCTTTCGAGGTGAGGACACCCGCAAGAAATTCACAAGCCATCTTTATGATGCTTTGAAGCAAAAGAAAGTTGAAACCTTTATCGACAATCGTCTTGAAAAGGGAGAGGAGATTTCGACAACACTAATCCAAGTAATTGAAGATTCTCATATATCTATTGTCATCTTCTCAGAGAACTATGCTTCCTCAAAGTGGTGCTTGGGTGAACTCAGCAAGATTATGGAATGTAAGAAAGAAAAAGGACAGATTGTGATACCAGTGTTCTATGACATAGATCCATCCCATGTAAGGAAGCAGACAGGAAGCTATGAGAAATTATTTGTAACACATAAGGGAGAACCCATGTGCAACAAATGGAAAGCTGCTCTCACTGAAGCAGCCAATTTAGCTGCATGGGATTCTCAGACTTACAGGGTTGAATCTGAACTCCTTAAGGATATTGTTGAAGATGTTTTGCAAAAATTGGCTCCTATATACCCAAACTGCCACAAAGGATTGGTTGGAATTGAAGAAAACTATGAAAAGATTGAGTCATTGCTAAAAGTAGGGTCAAATGAAGTTAAAATCTTGGGAATATGGGGCATGGGTGGAATAGGTAAAACCACCCTTGCTCGTGCTCTATATGACAAACTATCTCACGAGTTTGAAGGTCACTGCTTCCTCGAAAATGTAAGGGAAGAATCAGACAAGCATGGAGTCAAAGCTTTACGTAATAAGCTTTTTTCTGAGTTGTTAGGGAATAAAAATCATTGTTTTGATGTGGCCTTTTCAGTAACCAAGTTTGTTTTGAGTAGGCTAGGACGCAAAAAAGTTTTCATAGTCTTGGATGATGTGGCTACCTCGGAGCAATTAGAAAATCTAATTGAAGATTTTGATTTCATGGGACTCGGAAGTAGAGTCGTTGTTACAAGTAGAAACAAGCAAATATTTAGCCAAGATAAAATATACGAAGTCAAGGAATTGAGCTTTCATCACTCCCTTCAACTTTTCAGTTTGACTGTTTTTAGAGAAAAACAACCTAAATATGGATACGAAGATCTATCAAGAAGTGCAACCTACTATTGCAAAGGTGTTCCTTTGGCTTTGAAAGTTCTTGGTGCAACTCTTCGTTCAAGAAGTAAGGGAGCATGGGAATGTGAATTGAGAAAACTCCAAAAGTTTCCAAATATGAAAATTCACAGTGTCTTAAAATTAAGTTATGATGGCTTAGATCACACTCAGAAGGACATATTTCTAGACATTGCATGCTTCTTTAGAGGGAACCAGAGAGATCATGTAACAAACATGTTGGAAGCTTTTGATTTTTCTGCAATATCTGGGATAGAAGCGCTTCTGGATAGAGCTCTGATAACAGTTTCAGGGTGCAATCAACTAGAAATGCATGACTTGATACAAGAAATGGGTTGGGAAATTGTTCATCAAGAATGTGTCAAAGACCCAGGAAGACGAAGTCGGTTGTGGAAACATGAGGAAGTGCATGAAGTCTTCAAATACAACAAGGGAACTGATATTGTTGAAGGCATAATTTTAGATTTGTCCAAATTAATTGAAGATCTCTATTTGAGTTCTGATTTCCTTGCAAAGATGACTAACGTGAGATTTTTCAAAATCCATAGCTGGAGCAAGTTTAACATATTTAATGTGTATCTTCCTAATGGTCTTAATACTCTGTCTCATAAAATGAGGTACCTTCATTGGGATGGATTCTGTCTTGAGTCTTTGCCGGCTAACTTCTGTGCTGAAAAACTTGTGGAGCTTTGCATGCGTTGTAGCAAGCTTAAAAAGCTTTGGGATGGTGTTCAGAACCTTGTGAATTTGAAGACTATTGACCTGTGGGGATCCCGAGACTTAATTGAGATTCCAGACTTATCCTTGGCAGAAAAACTTGAAAATGTTTCTCTTTGCTATTGTGAAAGCTTGCGTGAGGTCCATGTCCATTCAAAATCTCTTCGTGTACTGAACCTCTATGGTTGTTCCTCACTAAGAAAATTTTCAGTGACATCAGAGGAATTGACAAGATTGAGCTTAGCTTTCACTTCTATATGTTCAATACCAACATCAATTTGGCACAAAAGGAAGCTCAAAGCTCTTTATCTAACGGGTTGTCGCAATCTCGGCAAGTTAACTGAGGAACCAAGAATTCACGGCTCTCACAAGCACTCCCTCACAGCATTGGCATCTAATGCTGAGAGATTTTCCATGAACATCAAAAGCCTTTCAACATTGAGGATGCTTTGGTTAGATGATTGTAAGAAACTTGTATCTTTGCCTAAGCTTCCACCATCCCTTGGGAAGTTGAGTGCTAGTAACTGCACTTCTCTAGACTCATACATGACTCAACGGCTAGTGTTGCAACACATGTTGCAGAGTCGCATACCCTACTTACGCACGAACGATCTAAGATGTTATGACGAAGAGTATTTATTTCCAGGAAACCATGTGATTGAGGAATGTGTGTTTAACACAACAGAGACTTCAATGACTATTCCTTATCTTTGGAAAACTGAATTGTATGGTTTCATTTATTGCATCATTCTCTCTAAGGGATCACTCTTGCAGTCTGATGTTTCGTGTTCTGTTTATCAAGATGGCATAAGGGTTGGTTGGCTCCAGAGATTGTTGGAATACGAAAGTTTAACTTCGAATCACGTGCTATGTATGTATCATGATATCAATGAATTTGATGCAATAAATGAAGAAGGGCATGGCCATTTCTTCAGCAACGTAACATTTATTTTTGAAAATAGTAAAGCAAGCATAGAAGAGTTTGGCGTCTTTCCCATATATGGCTCAGAATCAGGGTTGAAGCTGGTTGGGAGCAGATAA	2913	0.3859	MVDQKVIGVVAASSYSPSVVSSKRYDVFLSFRGEDTRKKFTSHLYDALKQKKVETFIDNRLEKGEEISTTLIQVIEDSHISIVIFSENYASSKWCLGELSKIMECKKEKGQIVIPVFYDIDPSHVRKQTGSYEKLFVTHKGEPMCNKWKAALTEAANLAAWDSQTYRVESELLKDIVEDVLQKLAPIYPNCHKGLVGIEENYEKIESLLKVGSNEVKILGIWGMGGIGKTTLARALYDKLSHEFEGHCFLENVREESDKHGVKALRNKLFSELLGNKNHCFDVAFSVTKFVLSRLGRKKVFIVLDDVATSEQLENLIEDFDFMGLGSRVVVTSRNKQIFSQDKIYEVKELSFHHSLQLFSLTVFREKQPKYGYEDLSRSATYYCKGVPLALKVLGATLRSRSKGAWECELRKLQKFPNMKIHSVLKLSYDGLDHTQKDIFLDIACFFRGNQRDHVTNMLEAFDFSAISGIEALLDRALITVSGCNQLEMHDLIQEMGWEIVHQECVKDPGRRSRLWKHEEVHEVFKYNKGTDIVEGIILDLSKLIEDLYLSSDFLAKMTNVRFFKIHSWSKFNIFNVYLPNGLNTLSHKMRYLHWDGFCLESLPANFCAEKLVELCMRCSKLKKLWDGVQNLVNLKTIDLWGSRDLIEIPDLSLAEKLENVSLCYCESLREVHVHSKSLRVLNLYGCSSLRKFSVTSEELTRLSLAFTSICSIPTSIWHKRKLKALYLTGCRNLGKLTEEPRIHGSHKHSLTALASNAERFSMNIKSLSTLRMLWLDDCKKLVSLPKLPPSLGKLSASNCTSLDSYMTQRLVLQHMLQSRIPYLRTNDLRCYDEEYLFPGNHVIEECVFNTTETSMTIPYLWKTELYGFIYCIILSKGSLLQSDVSCSVYQDGIRVGWLQRLLEYESLTSNHVLCMYHDINEFDAINEEGHGHFFSNVTFIFENSKASIEEFGVFPIYGSESGLKLVGSR*	971

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra10g0165	970	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	19	944	IPR044974	GO:0006952
	Vra10g0165	970	PRINTS	Disease resistance protein signature	218	233	-	-
	Vra10g0165	970	PRINTS	Disease resistance protein signature	294	308	-	-
	Vra10g0165	970	PRINTS	Disease resistance protein signature	384	398	-	-
	Vra10g0165	970	PRINTS	Disease resistance protein signature	630	646	-	-
	Vra10g0165	970	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	19	944	-	-
	Vra10g0165	970	ProSiteProfiles	TIR domain profile.	23	184	IPR000157	GO:0007165
	Vra10g0165	970	Pfam	Leucine Rich Repeat	611	630	IPR011713	-
	Vra10g0165	970	SMART	till_3	24	158	IPR000157	GO:0007165
	Vra10g0165	970	Gene3D	-	350	433	IPR042197	-
	Vra10g0165	970	Gene3D	-	186	347	IPR027417	-
	Vra10g0165	970	SUPERFAMILY	L domain-like	545	832	-	-
	Vra10g0165	970	Gene3D	Ribonuclease Inhibitor	486	852	IPR032675	-
	Vra10g0165	970	SUPERFAMILY	"Winged helix" DNA-binding domain	420	525	IPR036390	-
	Vra10g0165	970	Pfam	TIR domain	25	197	IPR000157	GO:0007165
	Vra10g0165	970	Gene3D	-	21	185	IPR035897	-
	Vra10g0165	970	SUPERFAMILY	Toll/Interleukin receptor TIR domain	14	159	IPR035897	-
	Vra10g0165	970	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	186	443	IPR027417	-
	Vra10g0165	970	Pfam	NB-ARC domain	203	419	IPR002182	GO:0043531

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra10g0165	Vra-Chr10	4532579	4537339	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra10g0165	9	797	WRKY Transcription Factor Family	AT4G12020	31.807	4.09e-99	341

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra10g0165	-		-	vun:114187776	1799.25