Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0157 ATGTCAAAAAAGTTGGATCGTGGAGGAGGAAGGGACCGGTTTAGGAGGGATTACCCTTCAAGGTATGAAGATAACAAGGGGAATGGGGTCAGTGGACGTGATAACCGCAGCAACAACCCTCCTTCCAGGCATCTCTGGGTTGGGAATCTATCCCACAGTATTGTAGAAGAAGAACTTGCTCACCCTTTCTTGCGATTTGGACCACTGGAGAATGTTGCATTCCAGTCTGGCCGCAGCTATGCTTTTGTTAATTTTAGAAGGGATGAAGATGCTATTGATGCCATGAGGGCACTGCAAGGTTTTACTCTTGCTGGCAATCCACTTAGAATCGAGTTTGCAAAGGCGGATAAGTCATCGGCAGTACCACGCGATGAAGATTACTCTTGGGATGAACGGAACTCAACAGTAAGGGGTTCTCCTTTCTCACAAAGAGAGTTTAGGGGACACCATGGTAGTCCTGGGCTGCAGTATTCTGACAAATCTAAGCTGAGTGACAAAAATCCAGAACCCAGTGAGGTCCTGTGGATTGGGTTCCCGGCTCAGTTGAAGGTGGACGAATCAATTTTAAAAAAGGCTTTTTCCCCATTTGGTGAAATAATGAAGATTACAACATTTCCAGGTCGTAGTTATGCATTTGTTCGCTTTAGGAGCCTTACATCTGCATGCAGAGCAAAAGACAATCTGAAGGGGAAGTTATTTGGAAATCCCCGTGTTCATATTTGTTTTGCCAAAAGTGAAACAGGTTCATCAAACAGTGAGAGGAGATCACTTAATGGCCCTCGCTCTCCAATTTACAAGTCAAGTGGTCGTGATGGATCTTCTGATAACCTCAGACAGGATCGGAGCTTCAATGGTGATCGCAGCATTGGTTCCCCAAATCAGTTCCGGAATTGGGATTCTGATCCTTATGATCACAAAAGGGGTTCTTCATGGATGGGTGGAACTAACACATATGAACAAAGGAAAGTTGGAGAGAAGGGGAGAACACAAGGAGTATCACAAGAAATCTATGAACTTATGAATAGTCCATCAAGAGAAAGAGATGATCGATTTCCTCAAAAAGGTGCATTCTACGAAGATCTGCGGGCCTTTACAGATGTTCATTATCTACGTGAGGCTAAAAGGCCGAAGACTGGTTCTCCTCCTCTTGAAAGAGAGCTTCCAGAGTATCCCTTCTCTGAATTAGAAAAACAGAAACAAGTTCTTCCAAGACTTTTATCTGATTTACCCGCACGTGAGCCTTTTGATAAAGGCTTTGATGTTGGAAATTTTACTTACGGCCAGACTCTTGAACGCCCCCCAAATTCACCTCTGCCTCGTTTAGATAGACAAGAAAGCTGGAAATCTTATGATAATTTCCAAATGGGTTCCGGTGCTCAGCAGTTAACTTATGTTGAAAAGAAAAGATTCACGCCTGAACCCGATAGTTCATCTTTAACGGAGTGGAAATGGGAAGGAACTATTGCTAAAGGTGGAACCCCTGTCTGTCGAGCACGCTGCTTTCCTGTGGGGAAAGTCCTAGATATCATGCTACCGGAATTCTTGGATTGCACAGCAAGAACTGGTCTAGATATGCTTTCAAAGCATTACTACCAAGCAGTTGGTGTTTGGGTTGTTTTCTTTGTGCCTGGAAGTGATGCTGACATGGAATTCTACAATGAATTTATGCATTATCTGGAGGAAAAGCAGCGCGCTGCTGTTGCCAAGCTGGATGACAAGACCACCTTATTTCTTGTTCCTCCATCCGAATTTTCAGAGAAAGTACTGAAGGTACCTGGTAAGTTGAGCATATCTGGTGTTATTCTGAGGTTGGAGAATCCTGTTTTAAATCATGGTCCAGGACACATGCAACGGGAAATGACAAACGAAAACCTGTTGTCTTATAATGAGAATATACTGCATCTGAAGTCATCATTTCCTTTGGAACGTGTACCTACATCACCATCTATTTCAGAATTGGGTAATTCAGGAATCAGCAATCTTTCATTTCTAGGAAATAAATTTGCAGCAGCTCCATCAGTTTCTGATTCAGTTCATGCCATGGCTACAATGTCTGAGTCTCATGACGAAAGAAATCGCAACTATCCTGTCCAGCAGCGGACTTCTGGGCCAAACTGGTCTTCTCAAAATCTGCAGAACTTCTCAAGTAGAACTCAATCATTGCAAGCATCAGGTGGTACTGTAGAACATGTTGCCGATGAACGCCAACTCACCATTCCAAGATCAGTGACAGATGTAAACTCAATTCAACATTCCAGTGGAACTTGTGTTATTCCATTTTATGGTGATAACAAGTTGTCTTACCCAGATATAAGACATTTAGATCCTTTATCAGTGCCTGTGGGAGCCCTTCCACCAGAACAGCTTGCACAACTAGCTGCATCTCTTCTTGAGCAGCAAAGGCAGTCAGGAAGCTCTTCGAGTACATCTGCATTGGCCGATCGTGATCCGCGCCAGATTAACAGATTTAACACGTCTGACATCTCATCCAGATTTAGCACGTCCGACACCTCATCCCGACAATCCCAAAAGTATGCTACAGAAAACAATCTCGTGAGTTCTGATCTGTCAACATCTCAGCTGGGTCAAATTCTACAGATGCAAAAACAGCAACAGATTTCAAATGCGCCCCAGATGTCACAAATGGTTCAAAGGGAACCACAAAGAGAGAGTACTGGAAATCAGCTGGTGGTGACTGATAGCAGCTTGCAGGAAGATTCTGATTCAGATCCACAGAAACGTCTACAAGCAACACTTCAGCTCGCTGCTGTTCTTCTACAACAAATCCAGCAAGGAAAAGGAAGTTGA 2808 0.437 MSKKLDRGGGRDRFRRDYPSRYEDNKGNGVSGRDNRSNNPPSRHLWVGNLSHSIVEEELAHPFLRFGPLENVAFQSGRSYAFVNFRRDEDAIDAMRALQGFTLAGNPLRIEFAKADKSSAVPRDEDYSWDERNSTVRGSPFSQREFRGHHGSPGLQYSDKSKLSDKNPEPSEVLWIGFPAQLKVDESILKKAFSPFGEIMKITTFPGRSYAFVRFRSLTSACRAKDNLKGKLFGNPRVHICFAKSETGSSNSERRSLNGPRSPIYKSSGRDGSSDNLRQDRSFNGDRSIGSPNQFRNWDSDPYDHKRGSSWMGGTNTYEQRKVGEKGRTQGVSQEIYELMNSPSRERDDRFPQKGAFYEDLRAFTDVHYLREAKRPKTGSPPLERELPEYPFSELEKQKQVLPRLLSDLPAREPFDKGFDVGNFTYGQTLERPPNSPLPRLDRQESWKSYDNFQMGSGAQQLTYVEKKRFTPEPDSSSLTEWKWEGTIAKGGTPVCRARCFPVGKVLDIMLPEFLDCTARTGLDMLSKHYYQAVGVWVVFFVPGSDADMEFYNEFMHYLEEKQRAAVAKLDDKTTLFLVPPSEFSEKVLKVPGKLSISGVILRLENPVLNHGPGHMQREMTNENLLSYNENILHLKSSFPLERVPTSPSISELGNSGISNLSFLGNKFAAAPSVSDSVHAMATMSESHDERNRNYPVQQRTSGPNWSSQNLQNFSSRTQSLQASGGTVEHVADERQLTIPRSVTDVNSIQHSSGTCVIPFYGDNKLSYPDIRHLDPLSVPVGALPPEQLAQLAASLLEQQRQSGSSSSTSALADRDPRQINRFNTSDISSRFSTSDTSSRQSQKYATENNLVSSDLSTSQLGQILQMQKQQQISNAPQMSQMVQREPQRESTGNQLVVTDSSLQEDSDSDPQKRLQATLQLAAVLLQQIQQGKGS* 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0157 935 Pfam SPOC domain 477 592 IPR012921 -
Vra10g0157 935 MobiDBLite consensus disorder prediction 246 272 - -
Vra10g0157 935 SUPERFAMILY RNA-binding domain, RBD 183 274 IPR035979 GO:0003676
Vra10g0157 935 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 245 IPR000504 GO:0003723
Vra10g0157 935 MobiDBLite consensus disorder prediction 796 815 - -
Vra10g0157 935 CDD RRM3_Spen 45 114 - -
Vra10g0157 935 MobiDBLite consensus disorder prediction 1 41 - -
Vra10g0157 935 MobiDBLite consensus disorder prediction 682 723 - -
Vra10g0157 935 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 115 IPR000504 GO:0003723
Vra10g0157 935 MobiDBLite consensus disorder prediction 868 905 - -
Vra10g0157 935 MobiDBLite consensus disorder prediction 822 851 - -
Vra10g0157 935 SMART rrm1_1 173 241 IPR000504 GO:0003723
Vra10g0157 935 SMART rrm1_1 44 111 IPR000504 GO:0003723
Vra10g0157 935 SUPERFAMILY RNA-binding domain, RBD 20 118 IPR035979 GO:0003676
Vra10g0157 935 PANTHER RNA-BINDING PROTEIN SPENITO 20 924 - -
Vra10g0157 935 MobiDBLite consensus disorder prediction 246 332 - -
Vra10g0157 935 MobiDBLite consensus disorder prediction 1 30 - -
Vra10g0157 935 MobiDBLite consensus disorder prediction 283 298 - -
Vra10g0157 935 MobiDBLite consensus disorder prediction 123 168 - -
Vra10g0157 935 MobiDBLite consensus disorder prediction 868 914 - -
Vra10g0157 935 Gene3D - 24 121 IPR012677 -
Vra10g0157 935 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 237 IPR000504 GO:0003723
Vra10g0157 935 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 109 IPR000504 GO:0003723
Vra10g0157 935 MobiDBLite consensus disorder prediction 796 851 - -
Vra10g0157 935 MobiDBLite consensus disorder prediction 696 723 - -
Vra10g0157 935 Gene3D - 158 256 IPR012677 -
Vra10g0157 935 PANTHER RNA RECOGNITION MOTIF-CONTAINING 20 924 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0157 Vra-Chr10 4265785 4299830 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0157 32 244 Eukaryotic Initiation Factors Gene Family AT1G22760 27.354 1.20e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0157 - - vra:106775670 1786.54