Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0148 ATGGCCTCTTCCCACGCTATCGAGAAAGACCCCACCTCCAGATACGCTCGGTATGATGAAGTGCTGGGGAAAGGAGCCTTCAAGACTGTGTACAAAGCCTTTGACGAAGTAGATGGAATCGAGGTTGCATGGAACAGGATCAGCGCGGAGGACGTTGTGCAGACGCCGCTGCAGTTGGAGAAGTTATACTCGGAGGTTCACTTGCTCAAGACCTTGAAGCACGACAATGTCATCAAGCTGTACAATTATTGGATCGATGATAACACAGCCACTGTCAACATGATCACCGAGTTGTTCACCTCCGGGAGTTTGAGGCAGTACCGTAAGAAGCATAAGAATGTGGATATGAAAGCCATTAAGAACTGGGCACGGCAGATTCTCCGTGGCTTGTGTTTTCTGCACAGTCAGACTCCTCCTGTCATTCACAGGGACCTGAAATGTGACAATATTTTTGTCAATGGGAATAGTGGACTGGTTAAGATCGGAGATCTTGGATTGGCAATTGTTATGCAACAACCTACTGCCCGTAGTGTCATCGGTACACCGGAGTTCATGGCCCCAGAGCTTTATGAGGAGAACTACGATGAACTTGTTGACATATATTCCTTTGGTATGTGCATCTTGGAAATGATCACCTGCGAGTACCCATACAGTGAATGTAAAAATCCAGCTCAGATATATAAGAAAGTTACCTCTGGTATAAAGCCTGCTGCTCTTGCTAAAGTAAATGATCCTGAAGTGAAGCAATTCATCGAGAAATGTCTAGTTCCAGCGTCAGTGAGACTGTCGGCATGTGAACTACTCAAAGACCCATTCCTTGCGACTGAAAACGCAAAGGAGATTAATCTTGATATACTGCAGCTGCCTAATAATCCTCATATCAAATTGATGAATCAACCAGTGTGCAAGCCTCATCCCATGGAGATAGATTTTAACTCCAGGCGTAGCTCACCAGGCTCGTCTGTGGGAAGAATTGAGGAAATTTCTCAGGTTTCAACTTTTGATCTTGTGAAGAGGACTGAGAATAACGAATTTAGGCTAAGAGGGGAGAAAAATGCTGAAAGTACAATTTCACTTACACTGCGAATTGCAGATGCACGTGGTGGAGCAAGGAATATCCATTTTCCATTCTACATCGATTCTGATACAGCAATTTCCATTGCTGAGGAGATGGTGGAACATCTGGAACTCACACATGAGGATGTATCTGTCATTGCAGAGCTAATACAAGATATGATTGTTAAGCTTGAGCCCAACTGGAAGCCTTTGTGTGAGAACCTCTCATCTGGGACAGATCATTACAGGGCCCCTTCAGAAGTTCAGAATGAACAGTTGAGCTGTCATTGGCCATTACAATCAAGTGATTACGATATGAAGACGATGTATGAGGATCTAGTTCGTCATGGGCCTGTGGATGGAGGTTATCAGGAGAAGCAAGAATCTGTTATGTCAGATATATCAGCAGAGTGTGGGATTACGATTGCCTCAGATTCTAAAGATGTAGAACCTGACATTTTTATTTTTGATGAATTCTGGGAGGGGTTTGATGTATTCAATTCCAATTCAGATGACAGGTTTAGTGGGCAAGAGGATGGACAAAAGAATCATTCAGAGAACTCAGAAGGCTCTCTAATCAATTCATGCTGCAGCCCATCTAAAAACTTTGACATGTCAAGCACTGGTTCTCTTAATATAGTTGACAAAGACCCTTCAGACGATCTGCAGTTGGAGCTTGAAGCAATAGAAACACAGTATCAACAATGCTTTCGTGAGCTTGTGAAGATGAGGGAGGAAGCCATAGAGAATGCTAAAAGGATGGATAACAAGGAAGAAGATACCGGTTACGTGATGCATTACGATGATTTTGTTTGA 1872 0.4348 MASSHAIEKDPTSRYARYDEVLGKGAFKTVYKAFDEVDGIEVAWNRISAEDVVQTPLQLEKLYSEVHLLKTLKHDNVIKLYNYWIDDNTATVNMITELFTSGSLRQYRKKHKNVDMKAIKNWARQILRGLCFLHSQTPPVIHRDLKCDNIFVNGNSGLVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEENYDELVDIYSFGMCILEMITCEYPYSECKNPAQIYKKVTSGIKPAALAKVNDPEVKQFIEKCLVPASVRLSACELLKDPFLATENAKEINLDILQLPNNPHIKLMNQPVCKPHPMEIDFNSRRSSPGSSVGRIEEISQVSTFDLVKRTENNEFRLRGEKNAESTISLTLRIADARGGARNIHFPFYIDSDTAISIAEEMVEHLELTHEDVSVIAELIQDMIVKLEPNWKPLCENLSSGTDHYRAPSEVQNEQLSCHWPLQSSDYDMKTMYEDLVRHGPVDGGYQEKQESVMSDISAECGITIASDSKDVEPDIFIFDEFWEGFDVFNSNSDDRFSGQEDGQKNHSENSEGSLINSCCSPSKNFDMSSTGSLNIVDKDPSDDLQLELEAIETQYQQCFRELVKMREEAIENAKRMDNKEEDTGYVMHYDDFV* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0148 623 Gene3D - 355 446 - -
Vra10g0148 623 Coils Coil 571 609 - -
Vra10g0148 623 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0148 623 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 357 413 IPR024678 GO:0004674|GO:0005524
Vra10g0148 623 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 4 606 - -
Vra10g0148 623 SMART serkin_6 16 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0148 623 MobiDBLite consensus disorder prediction 523 545 - -
Vra10g0148 623 Gene3D Phosphorylase Kinase; domain 1 2 97 - -
Vra10g0148 623 SUPERFAMILY Protein kinase-like (PK-like) 18 308 IPR011009 -
Vra10g0148 623 Gene3D Transferase(Phosphotransferase) domain 1 99 281 - -
Vra10g0148 623 CDD STKc_WNK 14 273 - -
Vra10g0148 623 PANTHER WNK KINASE 4 606 - -
Vra10g0148 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Vra10g0148 623 ProSiteProfiles Protein kinase domain profile. 16 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0148 Vra-Chr10 4131221 4134985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0148 1 605 MAP Kinase Kinase Kinase AT5G41990 52.066 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vra10g0148 Pkinase 1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0148 K08867 - gmx:100272202 999.964